Gene detail

Detailed information of BRAKERTYJP00000041982.1 in Cladopsammia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Cladopsammia gracilis · all data for this species · gene families

Sequence

CDS

BRAKERTYJT00000041982

ATGACTATAAACTCGCTCGCGAAACGGGGCTCTCAGATGGGAGAAGAAATGGCGACCAAGATCGAGGAGAGCTCCGAGCGAAGCACAGACGGAGTTGCAGGGACACCCAAAGAAGCCGCTCTGCGTGAACTGATGGAAAGGACAAAATACCCGATCCGACAATTTAATGGCCAACGCAGATATGGGCCGCCTCCAAGCTGGGATGCACCACCCCCTCCACGTGGCTGCGAAGTTTTTGTAGGAAAAGTTCCTCGAGATTTATACGAGGATGAATTGGTGCCTGTATTTGAGGCTTTAGGCGACATCTATGAAGTTCGGCTTATGATGGATTTCAACGGACAGAATCGCGGTTACGCGTTCGTTGTTTACACTAATAAGGAAGACGCCAAGAAGAGTGTCAAGACATTGAACAATTACGAAATTCGCAAAGGAAAATGTATCGGAGTTTGTAGCTCGGTGGATAATTGCCGATTATTCGTCGGAGGTATTCCGAAGAAGGTAAAGAAGGACGAAATCATGACTGAAATGATTAAAGTTACAGACAACGTTGTCGATGTAATTGTTTACCCATCAGCTCAAGACAAGACGAAGAACCGAGGCTTTGCGTTCGTTGAGTACACTTCGCATCGCGATGCTGCAATGGCGAGAAGAAAACTTATGACCGGTAAAATCCAGCTCTGGGGACACCAGATCGCTGTGGACTGGGCTGAACCAGAGCAAGAAGTCGACGAAGAAATTATGGATCAGGTGAAAGTTCTCTACGCCCGAAATCTTCTATTAAGCACAACGGAGGATACAATTGAACAAGTCTTCAGCAAATTTGGCGAGGTTGAACGCGTAAAGAAGATCAAAGATTACAGCTTTATTCACTTTCGAACCAAAGAGCAAGCCAGGGCCGCTTTGGAGGCCATGAACGGCAAGGAGCTTGATGGAAACGAAATTGAGGTGACGCTTGCTAAGCCAGTCGACAAAGACCATCGCCAAGCCAAGGCAGCGGCAAAAGCAGTGATGACTGCAACAACATACCCAAGCTTCACTCCTTATGATTACCCTACAAACTCTGCGACGGCATATGGCTTCCCAGCTTACAGTAGCCAGTACTTCATGTATGGAACTCCAATGACATCAGGAATGGGTGGTGTAAGGCCTCCTTATGGGATGGTACGGACAAGAGGGCGAGGACGCTCTGCTGCTGGTAGCAGAGCTGCTGGAAATAAGGGAATGTATTTACCTGCTCCTGGTGGTTATCCTTTCAATGGCTTCAGAGGTTATTACCCAGCAGTGCGGGCAGGATGGTATGGAGATGGGTATGGCAAGAGAGGAGGGAGACAGGAGGAACGCATGTTTGATCTGGTGCCGGGAATGGAGTTGACTCCCACTAATCCCATGACTTTGAAGCCACATGCCCTCAAATCACCAGCCCAGGTCTTAGAGGATGTGTGCCAAAAAAATCAGTGGGGTAGCCCGGTTTACACACTGCATAGCACAGTGGGACCGCAGGATATTCAACTGTTCCTTCACAAGGTATCCATCCCTGGATTGGCCACTCAATACCAGCCTCCCAAGTTGTGCCGTACAGTTGAAGAAGCAAAGAGTTATGCTGCAGAATACACACTCCAGCAACTTGGTGTGCCAATAGAGGTGGTGACTACAACAGCAACGGATTTGCCACCCACTACTGGCACCCCAGTCCCGTCTACAGCAACCTATGCAGCCCGCCCTTTACCCCCAGgGGCATACAGTCTCCCGAATTCTGGCCGTCCAATTAGTAGTGTAGAGGCGGGCTCATACCCCTCGGGTTATGTACCCATCAGCAATGCTCCCAACAGTGTTGCACCTGCGGCAGTGGTAGCTAAACTACAGGGTTCATGGCCTGCTGGGGTAGCACCAAATCAAGATGGAGGAATGTATGGCAATTATGAGGGATACCCTACTGGCGAACAAGGAGGTTATCCACAGAATATATACCAGCAGTATTAG

Transcript

BRAKERTYJT00000041982

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF14709 all species →	DND1_DSRM	double strand RNA binding domain from DEAD END PROTEIN 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR044461 all species →	Domain	A1CF, double-stranded RNA binding domain	Interproscan
IPR006535 all species →	Family	HnRNP R/Q splicing factor	Interproscan
IPR014720 all species →	Domain	Double-stranded RNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21245 all species →	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERTYJP00000041982.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.