Gene detail

Detailed information of BRAKERTYJP00000042373.1 in Cladopsammia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Cladopsammia gracilis · all data for this species · gene families

Sequence

CDS

BRAKERTYJT00000042373

ATGGCGGAGGAAGGAGAACTGTCATCTCCCGATGAACTGGAAACAAGCTGTGATGGTGTAGAACTTAATGTCCTCGATGATATACTTGGTGAACAAGCTAATGATGAATTTGCTGCTGAACTTGATACCGCTGCTGCTAAATCAAGTGcACCTACCAGAAAACGAAGAGCAAGCAACAGAGAGGTGAAAGGTGATACAACTAAAAAGAGACATGTGGAAAAAGAGTCAAGTCCAAAGAGTCAGCCCAAAGAAAAGACAACTACAAGTGGTCAAAGCTCTAAAAACTCAAGTGCAGCTCAAAATAAACCCAGTAATAAGACTGCAAAGGTGGCTTCTGCTGATGTAGAGACAACAAAAACAGATGTTGAACAGGACAAACCACAGTCTAAAGAGAAGGAGGATGTGAAAGAGGTCAGTAAAGAAAGCAAAGCCAAAGCCAAGGAGAAGGAGAAAGGACCAAGTCAGGTTGAAATTGAGAGCACTGGCAAGGAAAGGGGGAAGGAGAAAGACAGctcaaaaaataaacaaaaagatACCAATTCTGCTGATCCAGACACAGACAGCAAACCAGCTGAGAAAGAAGTGAAGAAGAAACAAGATCAAGTGTCGACTGTTAATGAAACTAAGGAGGTTGTAGCCAAGGATAAGGTGGCTGTCAAGAAAGTTGAAAACGCCACTAAAAAGACAGCTAGTCCTAAGAGGAAAGAACCTGTGAAAGACACTAAGAAAGATGGTTCAAAGAAGGAGGCTGTGAAGAAGGAGGCTGTGAAGAAAGAGGTGAAGAAGGATAGcaacagcaagaaaacaacagaaGGCAGTAAGATGCAAAGTAAAGTCACTAAAGAGAAAGGAAAGGCTGTTCCAGctgagaaaaagaaaagcaCAGCAGGCCCAGTCAAGAAGGAGGCAAAGCCAAGTGAGCACAGTACACCTACTGAAGCTAAAACCAACAACCAGCAGGAGCCTCCCAGTACTGTGCGGGAAAAACCACAAGAAGGGAAGGAAGGTGATGAAGTAAAGAGAAAGTCAACAGAAAAGAAGGTTGAGAAAAAGCCACAGAAAAAAAGCAGTGGAAAGGAAACTAAGAAGATGGCACTATCAGAAAAGGAACATGTGAAAGAGGACAAGCAATCTCAGGAAAAAAAGAGAACTGTAGAATCAAGTGAGGAAGTCCAAGAAGAAAAAGCAGGTGGGGATGACATGGTAGAGGACTCCTCTGTTGACAACAAAGCCGCTGCAAATGAAGAGATGGAGATATCAAGCAAGTACACTGCTGGTGAGGAAGAGGAGACAATGGAGGTTATTGATGACCTGGAGGAGGGCAGTGAAGGCAGTAACATCAGCGCAGATGAAGACTTCAGTGAAGGAGATGAACCAACTGGATCAGCTACACCTTCTACATCAGCCTCATCTAAATCAGAATCTGaaaatgtaAGTGGTGCGGAAGACAAGAAGCAACAAGAGAAGCCTAAAGTTAAAAGGAGGAAAAGGAAGGCTGCTTCTCCTATAGAAGGGACTAAGTCCAGTGACGAGAGTGACAATTCGTCAACAGAGAGCCTTCACATCAAAAGTAAGGTGGCAAAGGCATCTTCCAGAGACAAAAGCAAGATCAATGTAGATGACTTCTTTGAGGAAGCTCGTTACTTTGTAATGAAGAGTAATAACCATGAAAATGTAGCACTTTCCAAAGCAAAGGGTGTTTGGTCAACACCAAAGGCGAATGAGAAGAAACTCAATGCAACATTCAAGAGATACAAGAATGTCATCTTAATCTTTTCTGTAAAAGAAAGTGGCAAATTTCAAGGATTTGCTCGGCTGGCGTCTGAAGCCAAACATGGAGGTCCTACAATGCCATGGGTGTTGCCACCAGGAATGAGTGCTAAAGCCCTAGGAGGAGTGTTTAAACTTGAGTGGCTGAACAGGAGAGAACTGTGGTTCAGCAAGTGTTTACATCTAAGGAACCCCTGGAATGACAACAAAGAAGTCAAAATATGCAGAGATGGACAGGAAGTGGAGCCAGCTGTGGGTGAAGCTCTGTGCCGACTGTTCCCTGAAGACGAGACAGTAGACATCAGCACCTCTCACCACTCATCAGAACGACGACACAGGAAAGAAAGGGATACATCTAGGCGTCGTCCTAGGCACTCTGATGAACTGCGCAAATCGAAAAGAAAGCACAGAGTTTCAGGTTCAAGGCATCATTCACGGGACCATCATGATCCTTTACCCAGATATGAAGACAGATCGCGATACGGTGGTGTGCGACGAGAAACTCTTCTCCATGGCtccTATTCAGATTACATGCGGGAATACCAGCGTTCACGTCACTCTTCATCTCTTCCTCCATTAAGATCACATTTTCCTTCCCGTGCAGTGGATTTACCATCATATTATCCGATACACATGGGTCATAGCAGCTCACGCAGTGGAGGCAGCTATCATAGATCTGTCGATCTTCATGCAGCAGCTTGTGACGAGTTCCTAAGAAGAACTCAGTCAGAGCGAGGCAGCAGTCGTTACCGCAGCAGCAGACGGAGGTAG

Transcript

BRAKERTYJT00000042373

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04146 all species →	YTH	YT521-B-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007275 all species →	Domain	YTH domain	Interproscan
IPR045168 all species →	Family	YTH domain containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12357 all species →	YTH YT521-B HOMOLOGY DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000381 all species →	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0048024 all species →	Biological Process	regulation of mRNA splicing, via spliceosome	Interproscan
GO:1990247 all species →	Molecular Function	N6-methyladenosine-containing RNA reader activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20100	YTHDC1; YTH domain-containing protein 1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.