Gene detail

Detailed information of BRAKERTYJP00000047406.1 in Cladopsammia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Cladopsammia gracilis · all data for this species · gene families

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02268 all species →	TFIIA_gamma_N	Transcription initiation factor IIA, gamma subunit, helical domain	Domain	Interproscan
PF02751 all species →	TFIIA_gamma_C	Transcription initiation factor IIA, gamma subunit	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009088 all species →	Homologous_superfamily	Transcription factor IIA, beta-barrel	Interproscan
IPR015872 all species →	Domain	Transcription initiation factor IIA, gamma subunit, N-terminal	Interproscan
IPR015871 all species →	Domain	Transcription initiation factor IIA, gamma subunit, C-terminal	Interproscan
IPR003194 all species →	Family	Transcription initiation factor IIA, gamma subunit	Interproscan
IPR009083 all species →	Homologous_superfamily	Transcription factor IIA, alpha-helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10966 all species →	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005672 all species →	Cellular Component	transcription factor TFIIA complex	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0017025 all species →	Molecular Function	TBP-class protein binding	Interproscan
GO:0051123 all species →	Biological Process	RNA polymerase II preinitiation complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERTYJP00000047406.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.