Gene detail

Detailed information of BRAKERTYJP00000050294.1 in Cladopsammia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species abbreviation CGRAC2 · all data for this species · gene families

Sequence

CDS

BRAKERTYJT00000050294

atggcggacggCATGGAAGATTTAAAGCTCACCGTAAACCAGGATTTTGCAAAGAAACTTTATAAACAGAAGGAGAAAGCTGAGCTTGATCAATTAAAACAGAAGTTTGGTGACAAAGATCTCAGTGATGAATCTGAATCAAGCTCTTCTGAATCAGAAGATGAAGATGCGAGAGAGCTTACatcacaaaaagaaaaagattttCTTACCGTCCTTTCTATGATAAAGAATAAAGACCCCAAGATCTATGCCAAGGGTTCACATTTTTATCACAAAGATGATGAAAGTTCTTCATCAGAAGAGGACAGCAAAGAGCAATCCAAGGCTAAAAAGCCAATGTATCTGAAAGATTTTGAGAGAAAGGAGTTGCTAGAGAAAGGAAGTAAAGCATTCTTAAGTGATGATAAAAGTGATGAAGGCAAAACAGATGAGGGCAGGGCATCTCCTACTTTTGTGGAAGAGCAAAAACTCCTCAAGGAAAGTTTTAAAAAAGTCATTCAGGACAATGAGAATGACAATGATGATTTTCTGAAAGTCAGGGAAAAAACTTCAGAGGAGAAGGAAGCATTGCAGAAGTATTGGACAGACCCCAGTTTGGATGAAGGTGAACAGTTTTTGAGGGATTATATTCTTGACAGAAACTACATTGACAAGGATTCAGACAGAATTCCCACTTACGATGAGATTGTTGGTGACGATGAAGAGGATGAATCAGAAGTTGAAAAACAGGAAGAATTTGAACGGAAGTATAATTTCAGATTTGAGGAACCAGATGCAGAGTTTATCAAAACTTATCCTCGCACTATTCAAGGATCAGTGCGGAAAACAGATGAGCGAAGAAAAGAACAACGGAAACAAAGagaagtaaaaaaagaaaagGAGAAAGAACAGAAGCGAGAAGAACTGAAAAGATTAAAAAACCTCAAGAGGAAAGAGATTATGGAGAAGCTGGAAAAACTAAAAGcAATCACTGGTAACCCCAATGTGGGTTTTAAAGAGGAAGACATTGAAGGCGATTTTGATCCCAAGAAATATGATGAGGCAATGCAGAAAGCATTCAATGAGAGCTTTTATgaggaagatgaagatgaaaaaCCAGTGTTTGAAGATGACTTGGATGATGAGCTAGAAAACTGGGATGAATGGCAAGGCGATAACTATGAAAATACTGAGGGCGAACAACATGCAGATGGAACATTTGAGCATCACTGTGAAGATCCGGGCTTCAATATGGATGCAGATTACAATGAAAATGAAGCTAATGATCAAAATATATTTGGTGGTAGAAAGCGAAAAGGAAGATCAAGATTTGCCCGCGTTGTCGCGCAGAAGAAACCAGTGTTCGATCCAGACGAGAAAACGTTTAAAGACTACTTTGATGAATATTACAAACTGGATTACGAGGATATCATTGGAGACATGCCCTGCAGGTTCAAATATCGACAAGTTGTACCAAATGACTTCGGGCTTACCACGGAAGAGATCTTAGCTTGTCCTGATAAAGAATTAAACCAGTGGGTGTCAGTAAAAAAGATGTCTCAATACAGGCCTGAAATTGAAGAATACAAGGACGTAAAAAACTACCGTAAGCGAGGAAGAAACTTGAAAAGGAAGAAGATGATTCTCACTTCTCTGGCCGAAAACGACAGtaCTAAAGAGGAAAATGCCAAGAAGAAAAAGGTATCGGGTGATAGTTTGCCGAAAAAGACAAAAACGCCTGAAAAGGATCCAGACAGAAATGCAAAAACGCTTCAACAAAATGACAGCAAAAGTGGTGAGCAAAGGCCATCAAATAAGGCAGTAAATGGAAGTGGAGAAAACTCTGAGAGCCAGGAGATTTCAGACGAAAGAAATACGGAGGTAATGAGAGAACTCAAAAGCAAAAAGCACAAAGGAAGGGGAAAGAAGAAATTAAGCGAagtaaatagaaaaagaaagagaCTCACTTTTAAGGAGATGAAAGAACTCGCAGTGAAGAAGCGATTGCAAAGGCAGTTTAGAGGAGCTAAGAAGGAACCGCTGGCCAATCTATCGGCGGCGCGGCTAGCTTCCTATGGACtggtgaaaaagaaaaagaagaaatccTAG

Transcript

BRAKERTYJT00000050294

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12936 all species →	Kri1_C	KRI1-like family C-terminal	Family	Interproscan
PF05178 all species →	Kri1	KRI1-like family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024626 all species →	Domain	Kri1-like, C-terminal	Interproscan
IPR018034 all species →	Family	KRR1 interacting protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14490 all species →	ZINC FINGER, ZZ TYPE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000447 all species →	Biological Process	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14786	KRI1; protein KRI1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.