Gene detail

Detailed information of BRAKERTYJP00000050763.1 in Cladopsammia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Cladopsammia gracilis · all data for this species · gene families

Sequence

CDS

BRAKERTYJT00000050763

ATGATCGCAGGATTTGAGATTACCGCAATACCACAGtgtgggattttattcaccgaaATACCGCAACAAAAACtgagcaacaccgcaacacTTCAAACCCCCATGTCCCCTCATCTAGGCATGACACCATTGCACTTATCTGCATGGTCTGGAAAAGTAGAAGTGGCACGGTTGCTTGTGGAGGCTGGAGCACATATCAATGCAAGCTCAGATAATGGAGATTCACCTCTTATTTTAGCATGTCAGCATGGGAATTCTGATGTGGTTGATGTACTGCTAGACAGGGGTTGTAATTCTTGGAGTACAAACAAGAGTGGAGAATCTGCTTTGGATCTTGCTTGCAGATTtggacatgtacatGTGGTTGAACTGCTTCTCAAGTCTAAAGAAGTGAGGAGTGTTTTAGCAAGTGGGGAACCTAGTAAGACTGATCCTCCTTTACACTTGGCTTCCAAGGCAGGCCATGTGGAAATAGTAAGAATGTTGTTAGAGGCTGATGCAGATATTAACCAGATAATGACTAGTGGTACATGTTTACATGAAGCAGCACTGTATGGAAAAACTGAAGTGGTGAAGGTACTCCTTGAGTGGGGCATCAATTCAAGTGCCAAGAATAACGAAGGCCACACCGCACTTGATGTAGTGAATCTTTTTACAAGTTCTAAAGCATCATCAGAAATTAAGCAACTATTAAAAGACGCAGTTGCTGCGGACAGTACTGTATACGCCAAAGCTGTGAGGGATCACTTCAACATGCTGGATTCAACAGCCTTGTCATTCAAGACTGGAGACACAGTTATCGTGTTGGAACAAAACCAGAATGAAAGATGGAAAGGAAAAGTACAGAGTGGGGATAaagaaaaagttggatttttccCAGGAAACTTTGTCAGGCTGACTTCACCAAGACGAGTACCACCATCTCCGGGATTTAACAGGAACTCTCCCAAACTCAGAAGTTTTGGTAAAAAAGGTCCGCGCGACCGTGGCGATGAAAACGGGGACCAAAGTCCTGTTCCTGCTCCAAAAAAGGCCTTCGTGGAGCCGGCGTTACCTGAGAAGGGTATCAAGGCCAAAAAGGGATCAGTCAAGCTAGGAGCGGGCCTGCAGTATGTGGAGGTAGCGGTTGAGACAGTCCCGTTATCTCCTCCCCAGACCTCTGCGGGAGGAAATCAAACAAACAGCAAAACGCAATACGCAGAAGTTCTTTTACCGCCGAATGGTACTGTCCAAGAGGTGGAGGAATGTGAAGAGATTCCACAGCTTCCAAGTAAAAACAATAAGAAGCCTTCTTCTTCAAACGAACCTGAAGATATCTGGGTACGAAAACCACCTTCTCACCCGCCGCCCTCGCTTCCTCCTAAAACACGGACAAAAAGCGATGCGGCTGATTCTGATCGACGAGCTGCGAAAACAGGAAGACCGCCCGCCCCGCTTCCACCAGACCCGGAACCCGCGGGTCCTATGAATCCCGCGGGTCCTATGAATCCCGAAGGTCAGTCGGCTCCCACTATTTCGGACCAGGCCACAAAGCGGGTGGCCACCCCCGAGTTATCGAGAAAAGGATACGAGGATATGAGTCTTACCTCGGTGAGTGGTGGAAGAGAAACGCCTCCTGCTGAAGACATATGGAAACCGCAACCTGTGAATATGAGAGATCATACTAGACAGCAGCCATTATCGTACGAAAACGTCAGCTTACCGCACACAAGGCAGCCTCCGCCGCCCAGCGATATACAAAGCATGTTCATCTCAGATATTGACCAACAGGGGGAGGGTGATGATGGCTATGTTGTTGTTAACCAACAGCCTTCAAAACCGCCCGATGCTAGCGGCTATGAAAATGTCACGCCAGGTGCTGTCACGCAAGGCGTTGTCACACCAGCTGCTGCCTCTTCAGCGACGAAACGTACGCCGTACGAGAACGTGAATGATGGGTATTATGTGCCTATGATAGGAGGTATTTCGCCCGCCTCAAAGCAAACTGAGAGGATGAGTAATCAAACACCAGCAAAAGACGATAAAGTCCAGAATCTTTCAGATGATGCAGAGGAAAATAAAGATGCAATGGATTATGAGATGATGAGGAGCGGTGCAGTGCCAGCTATCCACCAGTACGTCAACATTAAACGACAAGGGGGAGACGCGGGTCATCCCTTAGAACCTACGGATCAAATCCCGCTAAAGATGCGAGACTACAACGCGTTGTTTGACTGGTTGGAGAAATTCAAGTTGGCGCTGTATATCGATAATTTTGTAAAAGGAGGTTTCGACATGACGAGTGTGCTTGGAATCACATCAGAGGATTTGACGGCTATAAACGTTAAGAAAACAGGTCACAGGAAAAAGATTTTATCAGAATCAGCCAAACTGGAAGGAACAACGGTATTTCCAACCGAAAAACCGAAAGATATCATGACGTGGCTGCGTCTGATTGGTCTAGAGCAGTACATTCCCGAGTTCTTGGACGGCGGATTTGACGACATGGATTTCTTACAGGACATGACTTTAGAAGACTTGGTAGCGATTGGCGTCACAAAACCAGGTCATCAGAGAAAGATTTGGATGGCTGTTAATGCGCTTAAAGAGGGAGACGAGAATGGAAACATGGTGGAGCAACTGGAAACAATCCCAACTGAAAGCGTGGATGAAGAGTTGACGCTGCAGGAAAGGAAAGCTTATTTAGAAACCAGTTTGGACGGAGACGATTCAGGTGTCTCCACGGATGAGGTGGAACCGGAAAACGCGCGAACGGATGACAGCGAAATGGAGTTTCCTCCACCGCCGACTCTTCTCGCGAGAGAAAATGTCAGCGAGGAGCCTTTTGTGGAGGATTCTTCATCGGCCGAGTCTGAGATTCCTGAATCTGCGGCGGCCGAGCGTGTGTCACGAAGAGAAGACAGTGACGAATCGCCGTGTGAAAACACACAACTAGATCTGCTCTCTGCTGTTCCACAAACATCACAAGACAAAATTAACCCTTCTACAGAACATGAAGAAAAAGACCTCAATAAAACCGATGTGGACACTTCATTACGATTAAACAGAGTGAATATTAGTCCATCTCTGGATAGCGAAGATGATGAACCCCCTCCCCGGCCTCCACCCCCCATGGAGAACATTGACATTTCACTCCCCGTACCCGATGCTAGTCTGAATAATTACCCCGATGATTCGAGAGGACCTGTTAAGTCCGTTAAGGATCTGGTGACGAAAGAAAACGATAGAATACGGACCTTCTCTTTAGACTCCACTTTTCAGAAGCCCAAGAAACCCGGCCCACCTCCGCCTGTCAAACCAAAAGGCGCCAAGAAGCCCCCTCCCCCTGCTGTCAAGCCCCCTCCTCCTGTTGTCAAGCCCAAGCCGCGGAAGTCAGGGTCTTTTTCAGGATCCAGTGAGAGGAGCTCAGGCGAGGAAAGCTGCGGAGACAGGTCGCCAGTAAAACCTCTCTCTCCTGTAACTCCTGTTAATCCCGTTGACAGGCGTAGCAGCACAGGTTCCAACTCCTACTTGTGGCCGTCGTTGCCTAGCAACCGACTCAGCGGAAACGGAAGTCAGCATTCGCGCAGCAGTAGTACTAGCAGCCAAGGCTCAGTGGAATCTGTTATTGAAGAGATGGAGGAGAGAAAAAGGAGTTTTGAAAGACCAGGCAGGAAGCATAGCGCTCCGGAACGATTGAACACGTCATACGAGTATAGTGGAGGACAAAGATTGAACCCAGCGGATGCCACGAGAGCTAAAGGAGAACTAGATGAACAAATTAAACAGATCTTGAGACCACGCTCCAGAGAGGACTTGACAGCGATATCCAGAGAATCTTCTGCATCATCTTCAAGTTTACCGGAGATTGAAGTGGAAACAGAATCTCCCAACACAAACGCAGGCAAAACGGAGCAAGATTTGGCAGAGGACCTTATGAAAGATATCAATAACATGCTGAGCGACTTCTCCTCTGAACTAGACACCATGTTCGATTGA

Transcript

BRAKERTYJT00000050763

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF07653 all species →	SH3_2	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR033635 all species →	Family	Ankyrin repeat and SAM domain-containing protein 1/Caskin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24174 all species →	ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21952	CASKIN, ANKS5; CASK-interacting protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.