Gene detail

Detailed information of BRAKERTYJP00000053797.1 in Cladopsammia gracilis

Genomic Location: JAJGOT010000582.1:259230...273551
NR annotation: no NCBI-NR hit recorded
Species Cladopsammia gracilis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERTYJT00000053797

ATGGCGACCTCTTCTCCGTTGTTTAGTGAAGCGACAGCATTTAAGAAGCTTTCAACAGaaaAACGTAAAAAGAAAGGGAGTAAAGGAAAAGAAGACACTTCAAAATTAAAGAGCAAATCAAAAACTAAATTATACAAGGAAAGCAGTTCCACAGAGCTTGCCTCTTCCAAGTTATTGGTTAGTTGTGTGCAGGAATCCGTGTGGGATACTGAATACAGTGAGGAACTCAGTGTCCCAGTGCCAGATCTGTATCCTGAGTTGTCAGATTCCTTACCAAAAATACAAGGAAGCAACACAGAGCCAGGAGAGATGGCAAAAGTAAATGAGTTTCATTGCGACAGTGAGGATAATGTGCAGTGTGTTCCAACCAGTTGTGGTGTCAGTGACCTTGCTAGTGACAATGATTATAAATACCCTCCAGATGTAAGTCAGAGTCAAGATGATTCTCAATTATCAAGCTCACACAGCCAAACAAAGCAAAAGAGGAAGCTAGCAAAGCCCAGGAAGGTCAGAAAACGAAAATCAACTGACCAGGAGCAAGACACCAACACATCAAAAGTGGACCCTGAACACCTTGATCACTCACAAATAACCGAAAAACAAGGAACTTGGGCTCAGTGTAGCATATCCGGTTGTGGGAAATGGCGATTTCTTCAAAACAATGTTGATCCAAACGAGATACCAGAAAGATGGGTGTGTGCGATGAATGCAAGTGATAAATATAATGAATGTAGTGCTTCACAAGAAACATTTGACAGTCAAGATGGCAACTTGGACGTGATGTACACACCTTACCCGAGTGGTGCGATTGTGTGGGCCAAGATGGTTGGCTACCCGTGGTGGCCAGCAATGATGGAGGACGACCCTGATTATGGTTACTACTGTGAAACTGCCGAAGACAATGTCACGCCGGCGATGTACCACGTGGTGTTTTTCGATAAAGTAGTCTCGAGGACGTGGGTCAATGCCGCTTGTATCCGGAACTTTTCTTGTGATGACGACCCAGAGGAAATGGGAAAGGTCACTTTTAAAGGGAAGAACTACAGAAAACAGTTGACAACAGCTACTCTGGCAGCACGGAGGGCAGTAGAATTGCCTCTTCAGctTCGACTTGCAGAATACGGATTTGCGGCACGTTACAAAGGACCCATTGGCAGAAAAGCAGTTGAAGAAAAGAAACGCTCAGTTAGCTCAGAAACAGAAGACGTTTATAGTGATTCGGTTACAGAATCATCAAGCCAAGATATTTGCAGCAGTGGAAATAGCTACAGCAGCGGAAATGGTTTTAGCAGTCCAGAAGAGAttaaaagagtgaaaacaaAAACCCCATCAAAGTCTAAAACTGACAAAGAGAAGCCTGTAAAAAAGCCGATGAAAAGCAAGACAAAGAAGGTGCAGCAAACTAAAGAAACTGATTCTTCCAGCAAAAATAAAGAAGCTGTGAAGAAGAAAGGGAAGAAAGCAAAGAAAACCACCGCGGAAGCCTCGGAGATAGCAGAACATGCACCTGGAAATAGTGCCATTGTCAGTGCCGATTCCAAGATGCAACCTACTGATATGAATGAGCCTGTTCTTGAGCAATGCATAGAGGGAAACCAAACCAAGAATGAGGACATTCCGTTGCTCACTAACCAACTTCATCCTTCTGTTCCTTCGACCCTAAGCACTAAAACGGATTCTGAAGAAACCATTTGTAAGAACAACAAGGGTATGAGTAAACTTAGTGTGAAAACGCTGTCCgactcaaaaacaaaatttaaactgAATAGAAAGAGTTCTGATGAAACACAAGGTGGAAAGAAACGAAAGATGAGCAAGGATGCCAACTCTGAACACAACTTCTTGGAAAATCCGGATGAAAGTAAAGAACAACAAAAAGCAGATCATGATGTAAAGATACCGAAAAAGCGAAGTGCGTCTGAAGAAAGCAAGCAAAAGAAGAAGAAGGCTGAGAAGGTTGATATAAACCATCATAATACGGCTGTAGAGGAGGATGAAGGGAACACGTGCGTACTATCAGGGATGTCTAAGCTTGCTGATCCCGaagaaaaacaaggaaaaagcATTGGAAAAGCAGAAGAAAGCGTCTCCCAAGATAAGCTTGTTAGAGACGAAATATCTTTGGACAGTGGAGTAGAGGGAGTAAGTAAAGAGAATAATACTGATTGTCTGAAGAATCAAGGAAATAAAGTGTCCAAAGTGTCAAAGAAGAAAAGAGCTGCAAGTAGGGTGTCGAAAGATAGCAACGAAGGCGCCTCAAGTTCAGAAACGTCCGAAGAAAAGAGAGTGCCCGGAGATGGCGTACATTCTAAAATGCATCTGAAACATCAAAAACCAGACTTTTCtctcaaaagatcacccgccaataCAGATGTTCGTATAACCCTTAGCGAAAACAGTTCTCGAAAGTCTTTACCAAAGCTAGTCAAAGCTTTTAAACCTCCTATAGCGAAGGTTGACAAAGGACACAAAATGCCCAAACTTTTGAAGCCCCAGTTTGTGAGTCCAGCACTTACAAAGACTGAAACCAAACACGACGATCGCAAAGAAGAAGGTAAGGAAGTTGCAAAGTCGAGTACTGTGAAGAAATCACTTGGAACCATGAAGGTATCAAAACTGAAGAGGAAAGCTTCCCAGAAAAAGGATCAGGACCTGGGTGAAacgtcaaagaaaacaaaggaagaaCACAATCAAGCTAATGACATCTTACCAGAGGATCTCCAGGCCGAAATAGAGGAAATCGACAATGACATCGCAAGTATGCAGAAAGAGTTGAGGGTGTCAGACACCAGCGATACAAGTATCTCCGAGGAGAGGGTGATTTCTCCAACCACCGATCACCAATTTCTGTCAGATTCACCGGAATTTTGA

Transcript

BRAKERTYJT00000053797

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001851 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00855 all species →	PWWP	PWWP domain	Domain	Interproscan
PF07496 all species →	zf-CW	CW-type Zinc Finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000313 all species →	Domain	PWWP domain	Interproscan
IPR011124 all species →	Domain	Zinc finger, CW-type	Interproscan
IPR042778 all species →	Family	Zinc finger CW-type PWWP domain protein ZCWPW1/ZCWPW2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15999 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0035064 all species →	Molecular Function	methylated histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24688	ZCWPW1; zinc finger CW-type PWWP domain protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.