Gene detail

Detailed information of BRAKERTYJP00000055024.1 in Cladopsammia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Cladopsammia gracilis · all data for this species · gene families

Sequence

CDS

BRAKERTYJT00000055024

ATGGCGGGAATTTCAAGCTATGAACCCGCGTTCGATCATAAGATTTCGGATAATTTTGGCTATGTTCTTTCCGTGAATGATGCTCATAAATTGATAGCGGAGTTCGAAACTAGATGGACAACGAAATTTTCCTGCTTTAAAGTGGACAAGGATTTCGGAAATATTGATTACTCTAAAAAATCTCACAAAATACTCTGGGAGGACCCACATGATTCTAAAGGAGCGAAAATAGGTTTCACCAACGTGCCATTCATAATATTGGGAAGAAAAGTATACGACTGTCAGCATGGTGTTGATAGGAAAGCAGGAGTGAAGAGAAAAAGGAAAGAGAAAGAAGAGAAGGCGGATCACGCAGATTTTGTATTCAAGAAAAGAAGATTTCTTGTCCAAGATACGCGAAAGGCCAATTGCACAGCACAGATAAAGATGAGAGAGATTTTAGCGTTTCCTGAATACATGatTTCGGAAGACACCAAAAAAAGACGGGAGGTGTCATCGAAAAATCTGCGAAAATCACTGGAAGAAGGGATTGTAAAACCCGAAAGAAGAATATATGTTGAACTGCCTCTTCTGTCAGATCATCAGCATCACTTCGTTGGCGAGGTTGCCGGGATTTGTCAACCTCTGGATGACAGGATCATCAAGAGGATACACGAGTTGGTTGCGGAAGGAGTTAAAGAGGTCGGTGAAATGAAAAGGCACTTGAAAATTTTGGTCAAAGAGGTCTTATTTAGAGACGAACAGCCACCACAAGATACCAACCGACGCTACTTTCCCAAAACATCTGATCTGCGTTCACACATGTATCGAGCCACTGTAAAAAACCGAATGTCCAGAATCGACCAAGCAAATGTGCAAATGAAGATAGACGAGTGGACCAAGGTGTATAAAGAGGATTCCTTCTGTTTTCGTCCTCATTCTGACCAAGATACCGAGAAGCTTGAGGTTCCAGAGGATGACAGTTGCAAAAATGAATCGGGAAATGATTTGGACGAGGAAATCTTTTTAACAAAGGAAGGGGGCTTGCAGAACATGAAATTGTTATTTGTGCATCAAACAGCGTGGCAAAAACGACTGCTTCGTCTCTATGGCAATAACATCAGCCTTCTTGACGCCACGTACAAGACGACACGCTACGCACTACCCCTGTTTTTCGTAGCCGTAAAAACTAACGTCGACTACCAGGTGGTTGGATCGTTTGTAACGGAGGACGAAACAGTTGGTTCCATTAAGGAGGCGCTTGAAGTCCTCAGCAAATGGAACCCAGACTGGAAACCGAAATTTTTCATGACCGATAACTCCTTACAGGAGATACAAGCCATTGAGAAATTATTCCCTGAATGCAGGGTGTTGCTATGTGACTTTCATCGGGAGCAGGCCTGGGAAAGATGGGTATCAAAAACCGCTCATGGGGTTGTCGCATTTAAAGAGGAAGTTCTTGCCAAACTACGAGGGATTGCTTATGCCTCCACCACTTCAGAATACGAAACAGCCGTTGCTATCTTAAAGGACTGGCATTTGTGGAAAACGAACTCGTCATTACGCAACTGGTTTCAAGAAACGTGGCTATCAGAGCGAGAGCGATGGGTGTGGGCATTTCGAAAGGATCGTCTCCCAGTAGCTGTCTACACAAACAACGGCATCGAAAGACAGAACGAGGATTTCAAGTACAATCATCTGGCCAACCACAGGGACAAGACCTTGAGTGGCATGCTATCTGTGCTAGTAACTGAGTTTTTGCCAGAAAAGTACTCAAGGTATATTGAAAAGAATGTCAGATGCCACAAAATGTATAGGACATACAATAGAGAGTTACCGGGATATCTTATAAACAGACCAAGATTTTTTGTGGAGCACTGCAAAGAAAAGATCAGCCTTGCAGCAGATATTGGCGAAACggaaatcaaactcaccgacaATGAAGGTGTATTCCAAGTAAAAAACGAGTCGTCAAGTAAGACGTGGTATCGGGTGCAGTTTGGGGACAACAATGGAACGCTCCCTTCCTGTGAATGCATGGCATGGCAGCGAAGTCGCTTACTTTGTAAGCACTTCTTTGCTATTTTTGAGCACTGTCCGGGGTGGAACTGGGAGAAATTGCCACAGAACTACCGCGCATCACCATTCATAACCCTCGACTATCACCTACTAAACAGCAGTCTTCCTACACAGCCCTCTTCTAGTGCCACACCTGAACCCGCTGATGACAACCTACATTTGGATGAACCACTGCCAAAAAGACCAAAGCCATGTTCTGGGGAAAGTGACGTACCTCTGCCCCAAGCGCCAATTCCAGTAAGGTCCAAACAATTTTCCAGAGGAACTGAGGGGAAAAAATGCCGCGATCTTCTTGACCAGATACGGCAACTTACCTTTGTGGTTCAGGATAAAGGAGCATTGTTAAGTCTTAATAAAGAGCTGGCAAACCTCCTGGAACATATGCAACAGTATAAGCCATCCGAAGATGGCGTTGTCGTGGAAGGGGGGAGACTAAGTCTTACACAAGAAGCAACAAAGTGTCCAGTAAGGAGAAGATCGCCATAG

Transcript

BRAKERTYJT00000055024

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21056 all species →	ZSWIM1-3_RNaseH-like	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain	Domain	Interproscan
PF04434 all species →	SWIM	SWIM zinc finger	Domain	Interproscan
PF15299 all species →	ALS2CR8	Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048324 all species →	Domain	ZSWIM1/3, RNaseH-like domain	Interproscan
IPR007527 all species →	Domain	Zinc finger, SWIM-type	Interproscan
IPR029309 all species →	Family	Calcium-responsive transcription factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47456 all species →	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16608	TTLL3_8; tubulin monoglycylase TTLL3/8	EC:6.3.2.-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.