Gene detail

Detailed information of BRAKERTYJP00000055874.1 in Cladopsammia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Cladopsammia gracilis · all data for this species · gene families

Sequence

CDS

BRAKERTYJT00000055874

ATGGTGCAGAAATTTTTAGAGTTCGTTCTTTTAAAAGAACATATCCAATGTAAATTTGCATTAGTGGAGAAACGTGTACATTTTTTGTTCGATGTCACGCTAAAACGAAGCGAAGAAGAAGACAACTTACGTTGCTGGGTAAAACTCGAGGGCAACGACGATGACATCAATCGCGCCAAGGAATATATTATAGCCGTTTGTTCACCATGTTCACCGCCGCTTTCTTCTCTCGAGGAGGCAGTTTTAAACGATAGCACGTCGCAAATTGACAGTGGCTTGACAAAGCAAACCCCATCTGTGGTCGAAATAAATACCCAAGAGTGTAATCACGACGTATCTACTCAACAAGACACTACAACAAGTGAAACTTTAGGCCGAGAGAAGCTTAATCTTGGAGATCAACGTGTGGAAATTATTTCACGGTGTGAAAATTTAGCAGCGCAAAGCACGCAATCACCCAACAACAGACAGGAATGTGCTTATACAGCAAACGCTAAAATACAGTCGTCCAGGAACGAAAAAACTGAGAAAGACGACGAAATGGTCACTACAGACGAAAGAGCTGAGATTTCGGAGAAGCCAAAAGCGAaggaagacaaagaaaagaccAGTGGTGTTTCTCCTTCGACGACGACCGACGAGTCGACTTTGAGGGATTTCGCTATAAAACTCGGGTATTCCGAGTCGAAGATTGTCACGGGATTAAGCAAGCTTGGCCCATCGGCGGACAAAAATGCGCTGCTTTGCGAACTTCTCAAAGCGGAGTCTTCGGTGAAGCAGCTAGAGGAGGGTTCTTCGATTGTCTCGTACGAAAAACCGCATCCTGTCCCTGAAGATGCAAGTTGCTTGAGACCGATCGTGATCGATGGGAGCAATGTGGCCATGAGtcATGGAACCCAAAGAGTGTTCTCATGCATAGGAATTGGTTTAGCAGTGGACTGGTTTATAAAAAGAAATCACCGGAACATCAAGGTTTTTGTTCCCAGCTGGCGAGCCAAGTCCTCGAGACCTGAGTCCCCCATTGCTGACCAGGAAGTTTTGAAGAGACTTGAAAGGGACAGAATTCTTGTGTGGACGCCAAGCCGCCCTGTCAATGGTCGGATTATCAAATGCTACGATGACAGGTACATTATAAAGCATGCTGTTGAAACTGATGGTGTTATTGTATCAAATGATAACTTCAGAGACTTGATGTCGGAGAGTCATGAATGGAAGAAGGTGATTGAACAACGATTGCTCATGTATACCTTTGTGGATGATAAATTTATGCCCCCTGATGACCCGTTAGGACGACATGGTCCAACCTTAGACGAGTTTCTGAAGAAGGGATGTGGAAAGTTATGTCCATATGAGAGACACTGCACTTACGGAAAAAGGTGCAAATTTCTACATCCCGAGAGAAATCCCATTAAAGCAGAAGCGGTTCCATTGCCACCTTGCAGTGAACACTTACCACCTGAAGTTCCCTATGGACAGGTGACAACAAGAAGACCATTGCCACCATGCCCAACAGAACATCAGCAGCACACAAGATCTCTTCCCCCTGCACCATATCACAAGCCACTGCCACTTCCACCGCAAGGTGAATTTCCTCAACAAATGGCCAGGGTGTTTCCACCAACTCTACGCACAGGCCAGGCAGTTGGCATTGGTCAAAGAAGATCCGACCCTTTACCTTATCGCAAGGAGCTGCCTCCCGATGTGCAGTTAATACAGGAGCAGTTTGGGCGCACCCTCAGTGAGCCAAGCTTCCAAGATCAGGCTTGTTGTGGGGTACCTCAGAGTTCCATGATACGGCGCAGCAGTCTTCCTCACATTCAACCTTTTCCTTCAACCTACTCACCAAGACCACCAGAAATTATGATGCGTGGCTCAATGCCGCCAGTGCCCAGGATGCAGAATGAGAATGGAATAGTGAATGGAGATTGGATGTTGCAACAAGATCAGCGGATGTTTGGAGGGCCGGGGTACCAGTTCCCACCACCTTTTGCTTCCAATCCACCAGTTAGCAGCCAGTCATCAGTTTATGAAAGCCGGCAACCCTCCTCTCTTCCACCAAATCACTGGAACATTCCTCCATTTCCCCAGCAGCAACCCCAGTACCAACCAGTGCATTACCAGTACGGCCCTGGTCCATTCCATCCCACTCGTTATGGAAGAACAGCCTACCAAGGCCAGGGGAATAGTTACTTCAGGTCACGAGCTCCACCGATCATTGATGGATGGTGTGGCGATGTCACCGATAATCCTGGAGACGGGGAGTCATCGTCGTCACTTGAGGTAGAGAAACTTCGGATTGAAGCCTACGAGAAGCTTTGTGAAGTTTTTCCCGATGATGTCGAAAAAGTTCTTTCAATACTAGATAAGTATTCAGATGAAACAAGTGTCGAAAAGTTGATGGAACATATGCTTGACAGTCCAGACGATGAGTAA

Transcript

BRAKERTYJT00000055874

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11977 all species →	RNase_Zc3h12a	Zc3h12a-like Ribonuclease NYN domain	Domain	Interproscan
PF18039 all species →	UBA_6	UBA-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021869 all species →	Domain	Ribonuclease Zc3h12a-like, NYN domain	Interproscan
IPR040546 all species →	Domain	Rege-1, UBA-like domain	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR051101 all species →	Family	ZC3H12/N4BP1 Ribonuclease and Regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12876 all species →	N4BP1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0036464 all species →	Cellular Component	cytoplasmic ribonucleoprotein granule	Interproscan
GO:0090502 all species →	Biological Process	obsolete RNA phosphodiester bond hydrolysis, endonucleolytic	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18668	ZC3H12, MCPIP; ribonuclease ZC3H12	EC:3.1.-.-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.