Gene detail

Detailed information of BRAKERTYJP00000059913.1 in Cladopsammia gracilis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Cladopsammia gracilis · all data for this species · gene families

Sequence

CDS

BRAKERTYJT00000059913

ATGCTACCCATTGAGAAAAAGTCAAAAAAGTTGGACAAAAGGAAGAAAAGAGACAAGGCTTTGGCAGAAGAAGAGTTAAAAACCAACATTGCTGAAACTGAAGTATTTGTGCTTCCAAGTGGGCAGCAAATTGAGAAGGAAGCCAATGAGCACACAGATTTAGCTTTGATTAATCAGAGAATCAGGGACAACATCCAGGCCCTCAGCAACTTTACCAGAGCTCGGGAAGAGGGAAGGTCCAGACAGGAATACATTGATTTGCTTGTAAATGACCTTTGTAAATATTACAGTTATGGAAAATATCTTATGGAAAAATTTGTGGAAATGTTTCCTTTAAATGAGCTGCTAGAATTTCTTGAGGCAAATGAAGTTCAAAGACCAGTAACTATCAGAACAAACACATTAAAGACAAGAAGAAGAGACCTGGCCCAGGCCCTTATTAACCGTGGAGTCAATTTAGATCCAATTGGCAAATGGTCCAAAGTTGGATTGGTTGTTTATGACTCTTCTGTGCCAATTGGAGCAACACCAGATTACCTCGCAGGACACTACATGTTACAAGGGGCTTCTTCCATGCTCCCAGTTATGGCCCTGGCTCCTCAGGAGAAAGAACGTATTCTGGATATGTGTGCAGCCCCTGGAGGAAAAACAACCTACATAGCCTCTCTCCTGAAGAACACTGGTCTGGTAGTAGCAAATGATGCCAAAAGAGAGAGAACAAAAGCTTTGGTGGCCAATATTCACAGATTAGGAATAAGTAACACCTTGGTTAGTAATTATGATGGCAGAGCATTCCCCAAGAATTTCAAAAACAGTGAAGCCACAAGACTTGGTGGTGGTGGTGCTGGTGCTGGTGGTGCTGGTGCTGGTGGTGGTGCTGCCGCTGGTGGTGCTGGTGCTGGTGGTGGTGCTGCTGGTGGTGGTGCTGCTGGTGGTGGTGCTGCTGGTGGTGGTGCTGCTGGTGGTGCCGCTGGTGGTGCTGCTGGTGGTGCTGGTGCTGGTGGTGGTGGTGCTGGTGCTGGTGCTGGTGGTGCTGGTGCTGGTGCTGGTGGTGCTGGTGGTGCTGCTGCTGCTGGTGGTGCTGCTGGTGGTGGTGCTGCTGGTGGTGCTGGTGCTGGTGGTGGTGCTGCTGGTGGTGCTGGTGCTGGTGGTGGTGCTGCTGGTGGTGCTGCTGCTGCTGGTGGTGCTGCTGGTGGTGGTGCTGCTGGTGGTGCCGCTGGTGGTGCTGCTGGTGGTGCTGGTGCTGGTGGTGGTGGTGCTGGTGCTGGTGCTGGTGGTGCTGGTGCTGGTGGTGGTGGTGCTGGTGCTGGTGCTGGTGGTGCTGGTGGTGCTGCTGGTGGTGCTGGTGCTGGTGGTGCTGGTGCTGGTGGTGCTGGTGCTGGTGCTGCTGCTGCTGGTGCTGCTGCTGGTGCTGCTGCTGGTGCTGCTGCTGGTGCTGCTGGTGCTGCTGCTGGTGCTGGTGCTACTGGTGGTGCTGGTGCTggtgctgctgctgctgctcaaactGTGATGGCAGGTTTTGATCGTGTTCTCCTTGATGCTCCATGCAGTGGCACAGGAGTCATATCTAAAGATCAGTCTGTCAAAATCAACAAGACAGAAAAAGATATACTGCGATGTTCTCATATTCAAAAAGAGCTTGTTTTATCAGCCATTGATGCTACAGATGCTAAGTCATCCACTGGTGGTTACATCGTATATTCTACCTGCTCTGTTATGGTTGAAGAAAATGAATGGGTAATCGACTATGCCCTCAGCAAAAGGCATGTCAAGCTTGTATCAACTGGACTGGACTTTGGTAAAGAGGGATTCACCAAGTTCAGGGGAAGACATTTTCATCCTTCTTTAAAACTAACAAGGAGATTTTTTGCTCACACTCACAATATGGATGGCTTTTTTGTTGCCAAGTTGAAAAAATACTCCAACAAAATCTCAACTGAAGaGTCCACAAGTCAAGCAGAAAATATTGTTAACGAGAGTTctaaacaaaaagaagaaaatagtgACAGCAAACGAActgcaaaagaaaaaagaagtaaAAGGAGAAATAGAGTTCCTAGGACCAAAAAGGGTTTTGGAAAAAATGCTGCAAagaagaagccaaagaaaagctGA

Transcript

BRAKERTYJT00000059913

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01189 all species →	Methyltr_RsmB-F	16S rRNA methyltransferase RsmB/F	Family	Interproscan
PF17125 all species →	Methyltr_RsmF_N	N-terminal domain of 16S rRNA methyltransferase RsmF	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023267 all species →	Family	RNA (C5-cytosine) methyltransferase	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR049560 all species →	Domain	SAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic core	Interproscan
IPR001678 all species →	Domain	SAM-dependent methyltransferase RsmB-F/NOP2-type domain	Interproscan
IPR023273 all species →	Family	RNA (C5-cytosine) methyltransferase, NOP2	Interproscan
IPR018314 all species →	Conserved_site	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site	Interproscan
IPR031341 all species →	Domain	Ribosomal RNA small subunit methyltransferase F, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22807 all species →	NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000470 all species →	Biological Process	maturation of LSU-rRNA	Interproscan
GO:0001510 all species →	Biological Process	RNA methylation	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0008173 all species →	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0009383 all species →	Molecular Function	rRNA (cytosine-C5-)-methyltransferase activity	Interproscan
GO:0070475 all species →	Biological Process	rRNA base methylation	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14835	NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase	EC:2.1.1.310	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.