Genomic Location: chr1:79662435...79677299
NR annotation: CAB4003077.1, KRR1 small subunit processome component homolog [Paramuricea clavata]
Species Muricea muricata · all data for this species · gene families
| CDS |
| BRAKERXEIT00000014519 |
| Transcript |
| BRAKERXEIT00000014519 |
| Protein |
| BRAKERXEIP00000014519.1 |
| UniProt accession | Description |
|---|---|
| B4G9L6 | KRR1 small subunit processome component homolog OS=Drosophila persimilis OX=7234 GN=dbe PE=3 SV=1 |
| Q3B7L9 | KRR1 small subunit processome component homolog OS=Bos taurus OX=9913 GN=KRR1 PE=2 SV=2 |
| Q8BGA5 | KRR1 small subunit processome component homolog OS=Mus musculus OX=10090 GN=Krr1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005202 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF21800 all species → | KRR1-like_KH2 | KRR1 small subunit processome component, second KH domain | Domain | Interproscan |
| PF17903 all species → | KH_8 | Krr1 KH1 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR004087 all species → | Domain | K Homology domain | Interproscan |
| IPR036612 all species → | Homologous_superfamily | K Homology domain, type 1 superfamily | Interproscan |
| IPR024166 all species → | Family | Ribosomal RNA assembly KRR1 | Interproscan |
| IPR048548 all species → | Domain | KRR1 small subunit processome component, second KH domain | Interproscan |
| IPR048549 all species → | Domain | KRR1 small subunit processome component, second KH domain, eukaryotes | Interproscan |
| IPR041174 all species → | Domain | KRR1 small subunit processome component, first KH domain | Interproscan |
| IPR048550 all species → | Domain | KRR1 small subunit processome component, first KH domain, eukaryotes | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12581 all species → | HIV-1 REV BINDING PROTEIN 2, 3 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0005730 all species → | Cellular Component | nucleolus | Interproscan |
| GO:0032040 all species → | Cellular Component | small-subunit processome | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K06961 | KRR1; ribosomal RNA assembly protein | - | Ribosome biogenesis | ko03009 | deepkoala |
Genes whose expression across the transcriptome samples of Muricea muricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Muricea muricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
