Genomic Location: chr1:123386596...123402799
NR annotation: XP_046863667.1, ruvB-like 2 [Xenia sp. Carnegie-2017]
Species Muricea muricata · all data for this species · gene families
| CDS |
| BRAKERXEIT00000020154 |
| Transcript |
| BRAKERXEIT00000020154 |
| Protein |
| BRAKERXEIP00000020154.1 |
| UniProt accession | Description |
|---|---|
| Q9DE27 | RuvB-like 2 OS=Xenopus laevis OX=8355 GN=ruvbl2 PE=2 SV=1 |
| Q9Y230 | RuvB-like 2 OS=Homo sapiens OX=9606 GN=RUVBL2 PE=1 SV=3 |
| Q9WTM5 | RuvB-like 2 OS=Mus musculus OX=10090 GN=Ruvbl2 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001930 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF06068 all species → | TIP49 | TIP49 P-loop domain | Domain | Interproscan |
| PF17856 all species → | TIP49_C | TIP49 AAA-lid domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR010339 all species → | Domain | TIP49, P-loop domain | Interproscan |
| IPR042487 all species → | Homologous_superfamily | RuvBL1/2, DNA/RNA binding domain | Interproscan |
| IPR027238 all species → | Family | RuvB-like | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR003593 all species → | Domain | AAA+ ATPase domain | Interproscan |
| IPR041048 all species → | Domain | RuvB-like, AAA-lid domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11093 all species → | RUVB-RELATED REPTIN AND PONTIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0000492 all species → | Biological Process | box C/D snoRNP assembly | Interproscan |
| GO:0000812 all species → | Cellular Component | Swr1 complex | Interproscan |
| GO:0003678 all species → | Molecular Function | DNA helicase activity | Interproscan |
| GO:0006338 all species → | Biological Process | chromatin remodeling | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0008094 all species → | Molecular Function | ATP-dependent activity, acting on DNA | Interproscan |
| GO:0016573 all species → | Biological Process | obsolete histone acetylation | Interproscan |
| GO:0031011 all species → | Cellular Component | Ino80 complex | Interproscan |
| GO:0035267 all species → | Cellular Component | NuA4 histone acetyltransferase complex | Interproscan |
| GO:0097255 all species → | Cellular Component | R2TP complex | Interproscan |
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11338 | RUVBL2, RVB2, INO80J; RuvB-like protein 2 | EC:5.6.2.3 | Cilium and associated proteins | ko03037 | deepkoala |
Genes whose expression across the transcriptome samples of Muricea muricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Muricea muricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
