Gene detail

Detailed information of BRAKERXEIP00000020702.1 in Muricea muricata

Genomic Location: chr1:26376283...26396581
NR annotation: CAB3991815.1, phosphatidylinositol phosphatase PTPRQ-like [Paramuricea clavata]
Species Muricea muricata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERXEIT00000020702

ATGTCGGCATCGTTCGACAATTTGGTGTCGCGAAAGGGAAGTCCTACGCATAGTTTTCGTAGCGGCAGCACAAATGCTTCAGCTTCAAATATGAGTGAGACTAGAGATATTTCACGTCAGTCAGCCCAACAAGCAAGACACAATCATCGTCGTGCAATCCAAGCaagaaaagttgtgtttttggtCTTGATTTTGTTGTTAATCCTTGGCGGACTGAGTTACGCCATATACAGAGTCGTTAGCAACGACTCCGAGGAGACAGAAAGTGCGAAAGTAAAACTGGAAGAAAACTTGAAGACAAGTTCTGAGATTGTGGAGAAAATAAAAACTTCCACTGTTCTTGAAATCACAAAAACGCTCATTCTCTCAGAAAACAAAAAGAGACGGAAGACCACAATTCATCACGCTATATCAACAATCTTGTCCATAAAACCAGCTCCTCAACCAGAACAGAAAACCTCATCAATGCCAAATGCTCAAGAAACACCGAGTCTTCAATCGACTGTCGTGGAATCTAGTTCACGTGTCGCTGTTCAGAGTTCTCCAATATCATCTGCAGCATCGTCAGACGTCGCAATAATGGAAAGCACCATAAGAGATGAGGGCATCGTAGCAACTACTGCCCGCGTTGTATCTGCGTCAAAAATCAAGGAATACATTTCATTTGAGAGTTCGAAAAGGCCAACACACCTTTCTACCCCACGACATCAAATCAAAGAAACTACAAGCAGTCGTGAAGAAATGGAACTTACTCCGTCGTTCGATACAAGTAAGTCTTCAACCGTAAACATTCTTAATCAAATTACACATGCGACCGATTCCATTGCAGAAACCAGCACCACAACAACTCAGTCATCCATGGTTAATCGAAATGATCGAGCATCAAGTTCCACAATCATCGCTCCTAGAATTACCTCCATCACAGACATATCGGCTCAAAATCCATCTTCAAGCGTTGTTGTAATCGAACATCCAACATTTTCTGCCAACATCATGTCTTCACAGGCCTCAACTCTTGTGAAAACCATTCAAATAACAGAATCCTCACAGCAATCGTCATCTCTATCAATTGTCAAAAATCAACCTTCACCGCCAGCTTCAAGCATTTCAACCATTCATGCACTCTATCATCATACCACCAAAGCAGCAAAGCAGAAAAATATTCAATCAACAATTGCAATAAAGTCCATAACTACTGCTGTTCACTCGCAAACTACACCAGATATCATTGCATCGCCTGAAACAACAAACATCCTACCGCGTCAGTTTTCACGCTTTCAGAAAGCAATATCCACTTCAACATTCACTTTTGCTTCCATGGATAATAAATTAATGCCAACTTCTTCTTCGCACGTTCATTCAGAAATTGAAGAAATCCGTTCCACAAGAACGACCAGAGCACAGCTCCCAACATCAATGTTTGAAAGCACGTCACAATCAAGCAATCTGTTTATCCTTGATTCCGTATCAACCTCTTTCATTCCTTCCATCTCGTCAAGTTACATGGCAAATTCATCACGCACAAATGAGGTAGAAATTCCATCACCAACAAGTTCCGCAGAAATTTCATCACCAGCCAAGTCCGCGGCAAATTCATTTCCAAACAGTTCTGCAGCAAAGTCATCACTCACAAGCTCCGTAGTAAGTTCATCCATAGCAAGTTACGTAATGATTTCATTGAACACCAGCTCAATGGTTGAACGGTGGAATACGACTAAAATCTCCTCGTCAATTCATGTTCATGCATCCGCGAGCGTGGTCACGCATGCAATTTCAGAAAACAGTACAACCGCCACAATTCAACCCAGCACAACCTTAGCCACTCCAGTTTTATCCAGCTCAGTTTGGCTTCCTCCATACTACCATCCATGGAGTAACTGGTCTACATGTTCACGTGTTTGTGGCGGTGGATTTACCCACCAAACTCGTAACTGTTCTGAGCGTGACGGATGCAGTGGCCTTGGGCCCAGTATTAATAGAACAATCTGCAATCTTCATCCTTGCAACGAAACAACATTTGATGTTTCTCTCAATTTAACTGATTATGAATGGAATGACGATTTCCACAATACATCTTCTCAAGCATATATGGACCTTACCGACCAACTGATACAACAGTTACAAAAACTTTATGGACAGAACGTATCCATCGAAGTTAATGCAATAAGccAGGGAAGTGTCATCGTAACATTTACCATCACATTCTCTTCATCAAGTCAGATAAACAATCTAACAAATGCGATTAATGAAGGGAAAATTGGAAATCTATTAGTTTCTTTGGTCAAAATTGTCAATAATATGGTGCCACACCCAATCGATTTTATCTTTATTCAAAACACGACAACAAATTCCACGAGCATCAAGTGGAGTCCAATAGAAGCCAATGCAACAAATGGAATCCTACTTGGTTACAAAGCAATCTTAATACCTGGAAACCGCAACTGGGCATTCGATGTTAATGATCCAACCTCACTAGATCTTGTAAATCTCAGTCCAAATACAGAATACAAAATCAGTGTTCTTGGATACAACATCAATGGCGAAGGCGAAGTAAAAAGTGTACCATTTAAGACAAAAGAACTTCCTCCTTATTTTCTTGCTTGGGGTAACTGGAGTAACTGCTCACGTGAATGTGGTGGAGGTGTGATGTCGCGAAGTCGCAGCTGTTCAAAGGAAGACATGTGTTCTCATTTGGGAGAATACGAGCAAAAAGAATACTGCAATGTTGAAAAGTGTAATGaaaCATCCTTCGAAGTTGGACTGAACGTGACAAATGCTGAATGGACTGATGACTTATACAACACAAGCTCCGCAGCGTATCAGGAACTCTTggctaaatttattaaagaGCTACAAAAGAAATACCCAAATGCAACAATCGACTTTGGAACGATTACGAAGGGGAGTGTGATGTTCAAATTTACAATAACTTTCCCAAAAGGCACCGCAACTGAAGCAGAAACGTTGTCCACCGATTTGGAAGAAAATGGTCTTGGAAATTATACAACTGAGGTCAAATCTATCGAAGACACAAACCTTCCACGTGTACCACCAGGAGCTATCAACGTTACCTTGATTACTCATCACTCAGCCGTCGTGAGTTGGATACCAATCCCCGAGGAAGATTCAAACGGCGCGATAATTGGTTACAAGATTATATTTATGTCTAACAACGAGACAATGGAGTCGAATATGACCGCGCGTGCCTCGGATACTGAATTCAATTATGTAGTTGAAAAACTTTCTCCCAACACTACATATCGGTTTCGTGTGTATGGGTACAATATAAATGGCAACGGGCCAGAAAGTGAATTGCATCATTTCACTACGAAAGTGCAAATACCAAAGATTGTTGTAGTCAATATAACTCACATTACAACAACACACGCGCTGTGCACCTGGCAAAGAATCACGGACGATAATAAAACATATGGTGCAGTCGCAGGCTACAAGGTTTCATTCACTCACAATCAACGGTCAGGAATGGAACTTGACGTTTCATCATCTCAAAGCAACGTTTATCTGGTCGATTTATTTCCAAACACAAGCTATGGAGTGATCGTTTTTGGGTATAATCATTACGGTGATGGAGTAATCAGTGATGTGTATAACTTTACTACAAAAGCTCAAATACCGAAGGCAATCCCGCAAAGCATCACGAACGTCACAAGAACCAGCGGTGTATTTTCTTGGAACAAAATTCCTGACCGTGAGGAATCGTATGGAAAAATTTCTGGCTACAAGATATTCATAATTTGTGAAGAGCAGCATTCTAGAAATATGACGGTTTCCCGAAATCAAAGCAGAACTGAACTACGTAATCTTCACTCAGGCACCAGTTACAATTTGACCATTGTAGCTTTTAACAATTATGGTGAAGGGATTGTTAGCGATATCATCGGCTTCACAACCCGAGAGGTCATTCCAAAACCAAATTCCGTTAGCGTAACTAACATCACCTTATCAACAGCCAAACTGCACTGGAAATTAGTTCCAggaaatgaagaaacatatggAAACATTGATGGCTACAAGATATTCATAAGTCATGACTGGGCAGTCAATATGACGACAGTATCGGATATGACATCAATTCTCTTACGAAATATTTCATCCAACTCAACCTATTGTTTTGTCGTGGTTGCTTTTAACAGATACGGGGATGGAATAAACAGTGACATAGAATGTTTCATGACTTTAGCGGAAAAAGCCATCGAGGAAAAAATGACCTCGACAGTCGTCACACCGTCCCAATATTATCCATCGAAGGAAATAACGATGAAAAGTAGTAATGTATGGAGCAATCATAGCATGTTACACACACAGGAAAACTCCATTAAAATATTTGTAACGACAATGGTTAATGAAATGTATACGACCACTGATATGATGAAGCAGCATCCAACATCATCCTCCCGCATACCTGTCTCGTCCTACACTCCCAGCTCCACGCTTACTTTGGATGAGCTAATATCAACAAATACAAAAGGAGAAACAAGCGTATTTCCTTCCACTGTACGACCAAGTTCAACTGCAATCGAGCCAAATCCACGAACGTCATCAAGAACCAGTTCGTCTACCAAAAAACATTCAACAACTACGTCAAGTCTTGAAACTTCCTCCACAGTACCAACCTCTACAGAAATCACACCTCGTCCAACAAATCCTAAAACTTCAATTGCTTCCATAGAGCCATCCACCTCGGGAATCACTCCTCGTCCAACAAACTCGTCTATAAAGAGTACGCCCACACTCTCCACCTCACCACCAGCAGAGCTTGAATACATTACTGGTAAAATACTCATGACTAGCGCAACATTCAGTGATGAGCTGAATGATCGCGAGTCACAAACTTACAAAACATTAGCAAGCAAGATTGAACAATCACTGAAAAATCTTTTCGAATCACAAGGCCTTGAACTTGAAAGCGTTAAAGTTTTAGGGTTCCGCAAAGGCAGCGTGATTGTTAACTTCTACGCCGTCACTCTTCCATCGATGGATTACCAAACTAGTAATTTTACGGACGCCCTTTCCAAAGCTGTAACAAATGGCACATATTTGGATGGAGAAACGTTTGATTTTGACCCAAATGACTTCTCAATGAGACAAGTTGAACCGACCATTGCAACAACCATTGCAAACGAAGCAAATAAAGGATTGCAGAAAAATGAAGAAGAGGATGATAGCGCGATGGTTGTTGTCATTGTGATATGTGTTGTGTTAGTCCTTGGTATCGCATTcgttgcattttacgtcgccaAGAAGAAGAACCTCTTAAAACGAAGAAAAAGAAAGGTTGTCCCTGAAGAtgatgaagatgatgatgatgatgactcaTATCCTTCCCAAACCAATGATACAGTTCGACTAAAGACTGCACGTGCTGGACGAAGAAGTCATGGCGCGAGAATTAATGGCGGACACAGCACGACTGAATgttaa

Transcript

BRAKERXEIT00000020702

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q58EX2	Protein sidekick-2 OS=Homo sapiens OX=9606 GN=SDK2 PE=1 SV=3
Q8AV57	Protein sidekick-2 OS=Gallus gallus OX=9031 GN=SDK2 PE=1 SV=2
Q7Z5N4	Protein sidekick-1 OS=Homo sapiens OX=9606 GN=SDK1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0019308 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF01390 all species →	SEA	SEA domain	Family	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036364 all species →	Homologous_superfamily	SEA domain superfamily	Interproscan
IPR050991 all species →	Family	Extracellular Matrix Regulatory Proteins	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR000082 all species →	Domain	SEA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46708 all species →	TENASCIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05030	CLCA3_4; calcium-activated chloride channel regulator 3/4	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.