Gene detail

Detailed information of BRAKERXEIP00000022434.1 in Muricea muricata

Genomic Location: :...
NR annotation: CAB3988597.1, vacuolar sorting-associated 8 homolog [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERXEIT00000022434

ATGACGGAAAAGAGTGAAGAAGATTTCTTAAATTTGGACGGAATATTATCCGTTAAATCCTTAGGAAGTGATCTTTTTTATGTAAATGATGCAAGCCAGTCCAGTTCCTTTGCAGTATCATCAAAATATGTTTCCAATTCAGCCATGGTTGACTTGGAAAAGGATTTGCCCGCAGTTAAAGATTTACCTACATTGGAAAGCATTCTTAATGagAAAGATGATATTGGAGATATTGATCTTTCTGTTGATATCAAGTTAGAAGATATcttgaaagaagaaaaatcaTCAAGCAGCGAGGCCAATAGCGTTGCAAGTGAGAAGAAACATGGTTCGATACTAAGACAGGTTGTTTTGAGAAAAATCTCTGCTCAAGTACAATCTGCATCAAGTCGCATTGAAGCTGGTTTACCAACTGCTATGGCAGTTTCAACCATCATTGCTGTGGGCACATCTCATGGAATTGTTTTAATATTTGATGCTAAACAAGCACTGCAGATAGTACTGGGAACAACAGGTCAAGGTGCTGAGTATGGTGCTGTAACAGCATTAGGAATAAATACGAATTCAACAAGATTGCTTTGTGGGCATGCAAAAGGCCAGATAACAATGTGGAATCTCTCCACTGGTAAATGTGTCCGACAAATACTAGATGCTCATCCTCCTGGAAGTGCTGTACTTCATGTTCTGTTTACAGATGATTTGACTGAGGCAGTTTGCAGTGACAGTGGTGGATCAGTGTTTCTTCTTACTTTTAAGAAAGTTATTGGTACGAGGACTTACGATTCTCAAGTTGTTTTCTCAGGAAGTCGTGGTGAGGTGTGTGTGCTGGCCCCTCTTCattttcctgaatttttgagAGATGATCCGCTGTCTGAACGCTCCTTGCTTGCACTGGCTACATTGACTAAGGTTGTTGTTTTGGCGTTGAAGCCACTGTTTGTTGTTGTGTTCATTTTTGGTCTTAAGGGCTCTCCCGATAGCCTGCCACTCCTTGCCTGGAATTTTGTGTTCATTCAACACGATCCTATGACAAGGTCGCTCAGTCCAGTTTTGGCATTTGCAAGAGAGTCTAAGATATATTTCTTTGGGTTTAAGACTGGTGAAGAAGGGAAAATTGATATCACTAAACTGGATGAAATTACCACAGACTTCAAAATCATTTCAATTCATTGGTTAGACTCGCAGTTGATCGCACTGGTTGATGCTCTTGAGAAGATCCATTTGATGGACGTAAGAAATGGGGAGATTCTGGAGACATTAGACCTGGATAGCATTCAACTTGTCTACAGCAGCAGTTTTTTCAAGTCCTTATCAAATGGCGGCAATGTCAGCGAAGCTCTCGCACTTGCGAGCGAGCACTCGTGTTATCAATCTGTTGTAAGTTTCAACTCGCAGCTCTTGATCTTAGGACGACAATCGATCCACGTGTTCACTATTCGAACTTGGGATGATAGAATTTCTGTCTTCATGAGAGGGGAAGATTTTGTTGGAGCTTTGAAGCTGGCTTTGTCGTTTTACAATCAAACTGCGAGAGGTGTTCTAGGTTTGCATGGAAGCAGGGAAGAAAGAATGAAAACTGTTGGTGGTATGATTGAATACATAATACATCGTTACGTTGATAAGCTGTTAAAGACGACGAAAGAAGCAGCAGATGTTGAGAATTTACGATCGTCTTTCAAGGACAGCATTCCAGTTTGCATTGACTATTGTTTGGCTATAGACAGAatAGACCTACTGTTCTCGGAAATCTACGATAAATTATCATCGGTCGATGTTATAAAAGAAGTTTTTCTTGAAAGTTTACAGTCGTACATTGAGGAAGACAGACTTGTTTCCCTCACCCCGATTGTCATGAAGGATTTTGTCGGTCATTATCAAAAGATGGAACGCCTCAAAGATGTTGAACTGTGTCTGGTCCATCTGGACTTGGTGAACCTTGATATAGATCAGATGGTGAAGTTATGTTGGAAGTATGAACTGTATGACGCTGTCATTTATGTTTACAACCGCGGAATGGCAGATTTTGGAACCCCACTTGAGGAACTTTTGCGAATTCTAAAAGCAGCATCAGAATCCAAACTCCCATTGAAAGAATCGATTGAAAAGCTGAGCTATAAGTTGCTGGTCTACATCAGCAGTTGTTTTGCTGGCCGGGCATACTCTCTGGGAGACATTCCAGAAGAGCTAGTTAAGCCAGTCAGAGGACAGGTTGCAGAAACATTGTTGAAAACTAGCTTGGAAGATGGGTCGAAAGGTTTGGCGTATCCAAATATTCGAACCCTGTTGGAGTTTGACACTGcagaatttttaaatgttttatcatTGGCTTTTGAAGAGACAGATTTTGACGAGGATTGTGGTGTTGTGAACGAAGTGCCAGGTCGACAGAGGTTTATAAACGTTTTGCTCGAGGTTTTGGTTCAAGGCACTGGATTTACACCAACTCAAGTGGGTGCTTTCTTCACGTTTATTGCTCGTCAGATGGCAAAGCATAGCGGAATTTCTCTCAACAAAGCGCTCTTTGAACAGGTTTTGGAATATTTGTCCAACCCAGAAGACATGGTTCGTCACGATGAACGCGAACAGGCTTTGTTGGAATTGCTCGATTCTGGAGCTTTGAAGCAATTTGACGAAGAACGAATTCTGGCTCTGGCAGAAAATGGCAAATTCTACCAAGTTTGCGAGATTCTGTATGTGAAGAGACGACAGTATGGCAAAGTTTTAAGTTGTTACTTCAGAGATCAGTCGCGACAGCATCAAGCATTTGAGTTTGTCAAAGCAAAGATGGCCGACGATTCTTATACGGATCTTGACCGAGCCGAACTGAAACAGACTGTGCTCGAGTGTCTACTGGATTTTGTTGCTGTAGATACGCGAAGAACAGCCCACATGATTATGGTGCATTTCCCTGATTCTTTAAAGTGGGCCGTCCAGAAATTAGAAGATCAAAGGCAAATTCTGTATAATTTCTTGAAAAGTGTTTTTGACATCAGCGAGTCATCGTTATCTAAATGCGAGCCCCCATCAGATGCAACAACGAATGAAACATTTATCGAGCTGATGTGCGAGTTTGAACCGTCCGCAGTTTACCGTCATCTGCAAAATGCGAGCAACTACAGACTGCAAGAAACTTTAGAGATTGTTAAAAGGTTTGATATTATTGACGCCACTGCATATTTGCTGGAGAGATCTGGTGATATCCAAGGAGCATTTGCTCTGTTGCTTCAGGCGTTGGGAAACTGTGTAAAGAACGTCGACCAAGGTTTCACAAATCGAGTAAACTCAAAAGAGATGGATTtggttttaaaaaattgtcacaaCACTCTTCATGTTATTATTCAGTTGTGTCAAAGGAACTCGAGAAGAATGGATGAAAATGAACGCGAGAGCGTGTGGTTTCCTTTACTGGAAATAGTGATGGCGCCGCAACGAAAACTTTCAGACATGAACAGCGATCACTTTCTAGAATTTAAGAAACTCACTCGTCAAGTATTGGACAGCATGACCGGTCATATTTCATGGCCAAAGATTTTGCAGAAAATTATGCAGGACCCGACGTACAATTCTGGGAAATTTGGCGAAATACGAGAATTGATTATGGGAATGTTGGACACATACAGTTACGAAGAGACATTGTTAACGACAACCAATCATCTGTTAGCCTCTGATCTCCATCGCTCACTCAACCAAGCGAAAACGTTACAAAATCGCGGTATAAAGCCACGGCAATTCATATGTCAGCTGTGTCATCGGCCCGTCATTCGAGGGGAGATGACGCCAAAACACGGCGATCTTATCGTCTTTAGGTGTCAGCATTGTTGTCACGCACGATGTTTGAGGAACGAATTTGGCGAGAACGCGAACTGGTCTTGTCCGGTATGCTCAAAGAAGAACATCGCACGTCGAGCTAGCTCTGCAGACGATCAACCATCAGACTCGTCACAAACTGAGAAGTTAAAGAAGAATGCGACGTTGGGCAGTGAACAAACAGAAGCGCTTAATCGCTTGAGAAAAACTCTCCGAGGACCTTCAAGGttaaAAATGTTAAACGAGTTATCGAAAGACAGTGACCGCGGCAGGAGATCAAGGTTTGCTTCAAATAGTTTACTACAAGATAACGAATTCCAACTTCATCTAGCTCCTCGTTTCCAGTTCCCTTGA

Transcript

BRAKERXEIT00000022434

Protein

Uniprot

Gene family

Uniprot term	Description
Q0P5W1	Vacuolar protein sorting-associated protein 8 homolog OS=Mus musculus OX=10090 GN=Vps8 PE=1 SV=1
Q8N3P4	Vacuolar protein sorting-associated protein 8 homolog OS=Homo sapiens OX=9606 GN=VPS8 PE=1 SV=3
Q9VRX2	Vacuolar protein sorting-associated protein 8 homolog OS=Drosophila melanogaster OX=7227 GN=Vps8 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12816	Vps8	Golgi CORVET complex core vacuolar protein 8	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025941	Domain	Vacuolar protein sorting-associated protein 8, central domain	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR045111	Family	Vacuolar protein sorting-associated protein Vps41/Vps8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12616	VACUOLAR PROTEIN SORTING VPS41	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005770	Cellular Component	late endosome	Interproscan
GO:0006623	Biological Process	protein targeting to vacuole	Interproscan
GO:0030897	Cellular Component	HOPS complex	Interproscan
GO:0034058	Biological Process	endosomal vesicle fusion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20178	VPS8; vacuolar protein sorting-associated protein 8	-	Membrane trafficking	ko04131	deepkoala