Genomic Location: chr10:4370428...4370805
NR annotation: XP_002164458.1, H/ACA ribonucleoprotein complex subunit 2-like protein [Hydra vulgaris]
Species Muricea muricata · all data for this species · gene families
| CDS |
| BRAKERXEIT00000022853 |
| Transcript |
| BRAKERXEIT00000022853 |
| Protein |
| BRAKERXEIP00000022853.1 |
| UniProt accession | Description |
|---|---|
| Q9CRB2 | H/ACA ribonucleoprotein complex subunit 2 OS=Mus musculus OX=10090 GN=Nhp2 PE=1 SV=1 |
| Q6NTV9 | H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus laevis OX=8355 GN=nhp2 PE=2 SV=1 |
| Q6P8C4 | H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus tropicalis OX=8364 GN=nhp2 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007293 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01248 all species → | Ribosomal_L7Ae | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR004038 all species → | Domain | Ribosomal protein eL8/eL30/eS12/Gadd45 | Interproscan |
| IPR050257 all species → | Family | Eukaryotic ribosomal RNA-processing and assembly protein | Interproscan |
| IPR004037 all species → | Conserved_site | Large ribosomal subunit protein eL8-like, conserved site | Interproscan |
| IPR029064 all species → | Homologous_superfamily | Ribosomal protein eL30-like superfamily | Interproscan |
| IPR002415 all species → | Family | H/ACA ribonucleoprotein complex, subunit Nhp2-like | Interproscan |
| IPR018492 all species → | Family | Ribosomal protein eL8/Nhp2 family | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23105 all species → | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000469 all species → | Biological Process | obsolete cleavage involved in rRNA processing | Interproscan |
| GO:0000470 all species → | Biological Process | maturation of LSU-rRNA | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0022625 all species → | Cellular Component | cytosolic large ribosomal subunit | Interproscan |
| GO:0031118 all species → | Biological Process | rRNA pseudouridine synthesis | Interproscan |
| GO:0031120 all species → | Biological Process | snRNA pseudouridine synthesis | Interproscan |
| GO:0031429 all species → | Cellular Component | box H/ACA snoRNP complex | Interproscan |
| GO:0034513 all species → | Molecular Function | box H/ACA snoRNA binding | Interproscan |
| GO:0042254 all species → | Biological Process | ribosome biogenesis | Interproscan |
| GO:1990904 all species → | Cellular Component | ribonucleoprotein complex | Interproscan |
| GO:0005730 all species → | Cellular Component | nucleolus | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11129 | NHP2, NOLA2; H/ACA ribonucleoprotein complex subunit 2 | - | DNA replication proteins | ko03032 | deepkoala |
Genes whose expression across the transcriptome samples of Muricea muricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Muricea muricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
