Gene detail

Detailed information of BRAKERXEIP00000023309.1 in Muricea muricata

Genomic Location: not available for this species
NR annotation: CAB3978971.1, homeobox MSX-1-like [Paramuricea clavata]
Species Muricea muricata · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q05916	Homeobox protein engrailed-1 OS=Gallus gallus OX=9031 GN=EN1 PE=3 SV=1
Q90471	Homeobox protein Hox-D12a OS=Danio rerio OX=7955 GN=hoxd12a PE=2 SV=2
Q1KKT2	Homeobox protein Hox-D12a OS=Takifugu rubripes OX=31033 GN=hoxd12a PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003035 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR050674 all species →	Family	Msh Homeobox Transcriptional Regulators	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24338 all species →	HOMEOBOX PROTEIN MSX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0048598 all species →	Biological Process	embryonic morphogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERXEIP00000023309.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.