Gene detail

Detailed information of BRAKERXEIP00000023823.1 in Muricea muricata

Genomic Location: :...
NR annotation: XP_028404393.1, structural maintenance of chromosomes flexible hinge domain-containing protein 1-like [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERXEIT00000023823

ATgttacaaaaaatataccagCAGATATCACATAAAAGTTACAATAATTTTGGCAACGCAGTAGTCCTGCTGTTTTTTCTTTGCGGCGCCGTTATTATTCCGATCGCAACTgattttgatttgaaaacaaagCTTCGTTGTAGTGTATCGAAAGAAGTGACTTCAAGCCAAGATTTCGTTCAGCTGAAATGTCTTTCAAAGTACGAAGCTTTATATCACTGGAAAATGTCGTTTGGTGTCCTTGTTCTTTTCAATTTTGCTTTGGTTTTGTTGTTTTCCGTCCTTTATGCGTCTTTCGCAAAATCTAAAATTGAAAGATGGGGAGATAGCACAGATGCTGAAGCACCGAAACCGAAGACGTTAGAACTACGGACAGCAATTGTGTTTAAGTGTTACCTCTCGCATTTGCTTCTGTCGCGTGTTCTCCTCCTGTTGTTGTTTGCCTTTGTGATTTTTTATCGCATCGAGTTTCCAACGACCTTTTCGTGTCCATGGCCTTATCCCATGAAGACAATTCCTTGTGTGAACAATATGGCGGCGAAAAAAGTCACCCTGGCAAAAGTCATCGCCAGTATTGACGTGGTGTTCGCTCTGTTTGCTCTGGTGGAAGTGATTTATATCTTGAGGTGGAAGCGCATTAATGAAGAGTTTTCTGTTATACAAGATATGGAATTTTGTCCTGTCTACATTTTAGGACAACGAGAATGTATTGGCAGTGTTgtgaaaaaaataagaaataatcAAAAGGAAAACGTCGAGTTTTGTGTAAAGCTCGTGATCCAACAACCGAGAAGCGAAGAAGAACAAGTAGCACAAACATATGACGTTCAACTAGACCAATTAGAAAACTATATCGACAAAATCGAAGACATTTTTAAACCACTCGAAAACCAGGCTACTGCAGCTCCGAAACGAATCTTGATTGTCGGAAGACCCGGCATTGGAAAGTCTTCCCTCACAAAACGGATCCTTCGGAAATGGGGAAATGTAAATGTAACTGATGACTTTTGGTATGGTAAACTAGTTATTCGTCTTGAACTTCGCGAGTTTAACCATGAGAAAcataaagaacaaaatatttcaagtttgtttaaaTACGGCGATGGAGTCCCAGCAAAGAATAACGAAGGCTTGTACGAGTTTATCAAGTCCAATCAAGAGCAAGTCGTCATCATTTTTGATGGTTTAGACGAACTTGATGTGGACGAAGACAAGTTTTCGGAGGAAAAGGATCGTCCATTTGAAGACGATGAAATAATGTCTGTCTATTCCCTTTATTTTCGGTTGCTTAAAGGCGATTTCTTGCCCAATGTGACCATTGTAACAACCACACGAAGAACCGGCGAAGCACTTTATCTAGatgtttttgacaaatttgacaGGAAACTGGAGATCTTGGGCTTTACCAAAGCAGAAATTGAAGAGTTCGTAAAACAGCGAATAAACCAAAAGAAACGCGAAGAAGTATGGAAAGTCATAAAGGAATCAGCAGAGTTACTGAACATTTGTTATATTCCAGCGAGCTGCAACATAGTCTGTCGGActttgaagaaaattgaaagcccaGTTGATAGCTCACTCACTCTCACAGAAATTTACAGACTACATGTAGCAACAATGTTGCGCGAACGTCATAGATCGTTCAAGGATAAACAAATAAAGAAAGGTTACCTTTTTGAACCAGAATTACCAGAAGAAATGCAGAATGACCTTAATATGCTGGCGAAGAAAGCCAAGTCAGCGCTTGACCGCAATTGGAGTTTAGTATTTGATCTCAACGATGTTTCCTCTGATCTCAAAGATTGTGGCTTGCTGGAGATGGTAGAGGATAAAGATCGCAGTCTTTATTCATTCCCGCATCTTACAATACAGGAATACCTCGCTGCAGTTCATATATTTCGTGAGGTTAAGAATTTGTCAGAATGTTTGGGCAGGATGGTGGACGAGGCTAGGTGGCATCTCGTTATACAGTTCCTCGCTGGCTTGATAGGACGAGAGTTAAAGCGTGAAGATTTATCTAGCGAGAAGAAAGATGCATTGGTTGGGACTGTTTATGATACATTTGTAGAGTGGATCGCTCCGTTGAATGAATCGGGGAAAAAGGACAAAAAAAAGCCTTTGCTTGCTGTGAAATGTATCCATGAAATTCAGGATTGTGAGACAACCAAGGCTGCAAGCCAGAAGCTGGATGGCGGAGGAACGAAAGGTTTCAATCTGCGTAGTTCCAACATCGAACCCATGGACTGCAAAGGCTTGTTTGATCTTTTGAttcatgtacaaaatttgaatgCTCTTAATCTTCCTGGCAATCATATCTCTGATCAAGGAGTACGCGAACTTTGCAAGCTGCTGAGAAAAGTTCCCTTAGATCAATTGAATATCGCAAATAATTTGATCACAAATGATGGTGTAAAAGAGTTGTGCGACGTCATGGTTGAAGAAGAATCTTCCCTGCGCCATTTAAATATCAGCGTTAATAGATTCACAGATGAAGGTCTTAAGACGTTGTGTGAAGCACTAAAACATCCGAACTGCTCGCTCGGCTCTTTAGATGTTAGAATTTTCGGGGACCGGATTACATACGGAGGAGTCCTATCACCTGAAGGTCGCAAATATATCTGCGACGCCTTGAGAAATGAAAATTGCAGGCTAGTCGATCTTCGTGTTTTGTGGCCGGTCTCTTTTGTGGAGTCGTCGGATAGAAGGAAAAAGGAGTTCGAAGATATCCGTGATTTGTGCGACGCACTGCGACATGTAAATTGCAAATTGGAATGTTTGGATCTTGGCTGGTACGGAAGTTCTGGTGAATACGGTGGTCGTCGGGAACAGCTTGAAAAGGCTTCACATGTTCCAGGATTTCGATACAAGGAAGGGGAAAAGATTATTACACAACATATTTGTCAACATGGTGGCAAAAGTTGGCCATACTGGTTTAGAAAATTTGCAAACATAACATGTCTTGGCCCACACTCTCTGACCCTTCAAGTTTTGGCCAGTGACAGCATGACGAACCTACCGCCAAGTACTTTTCCAAAACACAAGATCAAGTTTACTGTAACAGAGGGAGATCCAGAGAAATTTACTGTTGGTGTACTCGACAGTCCTTTGCGTATTGCTTTACCATTTCAGATCCCATTGAATCTTCAAGATAGTTTTGGCAACCCTACGAAACCATCTGGCAAATATGAAGTTGAACTAACATGCAGTTGTTTGGAAATCACACATGAAGCGACACAGGTTAAAGGAAACAGTTTGATCATTAAAGGGGTCACAATGATCGGTAATGTGCCGTCACATACTGGCAAGGATTTCACAGTAAAAGTGAGTCTTTCTGGTATAGATGGTCAACAAAGTCTAAAAATGCGCCTTTTGCCAGGTCCGCCTGCCTCCATTTGCTCGCATCCTTTTGAGGAACAAATTGAAATAGAGAACGGAACACCGCTGACCCTGTCAGTGCAAGTTAAAGACAAAGCAGGAAACTTGACTGTCCAACCAAAGCTCAATGTTGTCTGCAAGTTGACAGGTGCGTCAGGTTTGCCCACATATCTTGGTGACTGCAGTACGTCTGGCAAGGCCTCACTCACTGGAGGAAATGTTGTGATCAACAAACTCGTCAAAACCACAAAACTGAAAGCCAAGATTGAGTTAcagCATTTCAAAGAAATTCCGGCAATTGAGAAAGTGATCCTTGTGAACCCCAGTTCGCGAGCGGCGGTAATTGAGGTACACTACAAGAGCCCTGGAGATGAGAAGGGTATAAAGATGAAGAATGAAGATGAGCTGTCGTGTATAGCTGGAGAGACCATCACTGGATTAAGCTTTAAGATATTTGATGAAGGTAAAAGACAGCTGACAATTGACAATGCTTTAGCAGCAAAAGTCAAGGTAAACTGGATAAGCAAATTCAGCCGTGATATTATAAAACAAGGATTACTGCCAGAGATTAAGGCGCCAAATACGGTAAATGATACTAAATTCTGCCAAGTCTCTCTGGGTTCTGCTCTGGGAGTAGAATTCTCATTTACGCTTGTGCCGCAACCAGGTAAAGCCGCAAATTTGAAATGCACTTGTCAAGATAACAAAATCCAACTTGGCGAAACCATTAAGCATGATATCATCGTGACATTCAGTGATAGATATGGCAACCAATTAATGCAGCTCCCAAACAGTCCAGCATCACCCATCACCGTCATTGGGGAGGGATTATGTCAAGCTAATGTTAAAGTGGTTGTGAACAAAGATGGAACGGTCTCATTAAAAAATATCCAGTTCAATGATCATGTTGTTGGAGTAAAAGAACTCACTATCAAGTGGGAGAACTTGACATGTTACCAGCGAATCGAGGTCAAAAGTGGACCACCTGCTAAACTAAGAATTATAAGTTTCAATGCAACACAGCCTATTGGTGTTTTTAGCAACACTCAATTTCCGAAGCCAATCGTTCTTCAGTTGTGTGACGCATTTGGTAACCCTTGCCTGGAAAACTGTGTCAAAGTTGCCCTGAATAAAGACACAGGATTAAAGTTAAATCCTGCACCTTCCCCTCAAAAAACTGATGCTAAAGGACAAGTAACATTCAGTCATTTTGAAGTGTCTGGACAAAGggGTACTTATGAGGTCCGAATTAAAGCACTGATTGGTAGAACTTCAATTGATGCTAATCCTATATCAGTAAGGATCGACGCCAATCCCAACAAACCTGTCAAATTGGTCGTGGATCGCTCAAAGTTTCAGGAGAATTACGTCGTCGGCAGCGCCATAAAAGATTTTTCTGTCCACGTGCTTGCCGAAGACGATCACGTCATGAAATGCAACGTCAaggattttgttttaaaactttgGTCTGCGGAGCACAACAGTTCTTCGACAGACCCACCATCTAAGGCTATTTCTTTCCAACCTGGCAAGAAGAGCGCCGCAGACAAAGAGAATCACTATTATTTCAGAGACATCAGAGTGCCCGAGCAAACTGGGTCATATTGTATGTTGTTGCTGTACTCGACCAGTGGAAACATTAAACTGAAATCCGAATCGATCCGTGTTGCCGTGGGTGCTGGGCCTCCTGTGAAGCTCGTACCAGTGGGAAGTCTTGCCACACCGACGGTATCCAACACTCAGAGGGCAACCAGCCGTTATCTGCTGAGAAACACGAAATTTTTACTCAAGGACCAGTACGACAACGTAACAGGCACTGATTTAAACGGAAAGATTGAgatcagcattaacaaagcacCACAAACTAACGAGATTCCTATGTTACAAGGCAATGTTCAAAAAACGGAAATACCTCTAGTGAATGGTGCTGCCACAGTTCAAACTCTTTCCATTGAACAGAACACGGGTGGAAAAGATGGACAAGAGTATGTGCTCAGCTTTACCGTGAATGTCAGTGGGCGACGACACAGCATCCCTGCTTGCACTTTACCTTTTCTATTTTACAACGACGTGAGAAAACAACAGCAGAGTGCACAGTTAACAAAAGAACGAGATCACTTATTTGAAACGATCAAAGCGTACCGGTCCCTGTTCGACACTACCAGACAACTCATAAACGAAATGAAAGTTGCTGTTCATGAAGCATCTTTGGCAGAAACGAAACTGCGTTCAGAACTGACCAGACAAAGCGTCCCAGCACAGAGTTTACAGTCCACCGAGTCAGTTGATGCATTCATTGCTCAATTGACCACAAAACGGAATACATTACAAAATACTCCTCGGCGCCAGTGTACTTTGAGCCCAGGTCCACGCGGTGAAGCTGGAGTTCTTGGAAAGgTTGCGCATCTTGCTGAAGTGATGGATAACGATATCGCACGAGTGTTATCTTGGCATTTGTCAGGCGACATGGATTGTGTCATCACTTTGACCACTGACAAGGCAAAGAAAGTGTACCGTGAGTCAAAAGGAGCACAGCAAGTCTTGCCCTTGGATTCCATCTACAAACGAAACCTACCAGAGTGGAACAAGCCTTTACCTCATGAAAGATCGAGGTCAAGCGCTCAACCAGCTGGGCATCCAATCTACGCGAGGTCGGCGTTAATCTTCCCACAGGAACAGGAAAACTGTAAAATTGTGTTTGGAATGCTGCTTGGTGATACAATCATTCTGGATAATCTCGACTGTGCAAACACGTACCGCCAAGAGGTGGTGAAGTATACTCATTGTCCGACAATTTTGACGAGAACTGGTGATCGTATTAGAAGCAATGGTAAATTTGGAGGTTTACAGAACAAAGCACCGCAAATTGAGAGATTACGAGGAGTTGTGTTCGCAGCGCCATTGCCTCTAACCTACCACACCATTTGCACCCAATTGGAACAATTCAAAGCGTACAAACAAGCGATGATCAAGCACTCCCAAGCTCAAGATGACTACAAGGTTCAACTAGATCAGGTCCAAACTCCCGAGATGCAAAGCAAGCATCAAGAGTGCCGCGAGGCTGAGATCCAACTTCGTCGCATTGAAGAACGGCTTGGTATGACACCCGCGCAGTATGAAATGCCTGCTAGTCCAGCTACCATGTTGCAGTCAGCGTTATCAAACACATCAATGAGTCGGTCGCGTCCATCGAGATCCGCCCCAGGAACACGATCCACGCCACTAGCGCGGCCACAGCCTGACCCAAGGTCAAGGGGACAAACCGCTGCTCAACAACGTGTTGTGAATGGAGGCCCAAGTACCCCGACTCGAAGTCGACGAAGTACGGCCACTCCCGACTCGTATGCTTCGCCAAGTAAGCGACCGAGACGAAGTTAG

Transcript

BRAKERXEIT00000023823

Protein

BRAKERXEIP00000023823.1

MLQKIYQQISHKSYNNFGNAVVLLFFLCGAVIIPIATDFDLKTKLRCSVSKEVTSSQDFVQLKCLSKYEALYHWKMSFGVLVLFNFALVLLFSVLYASFAKSKIERWGDSTDAEAPKPKTLELRTAIVFKCYLSHLLLSRVLLLLLFAFVIFYRIEFPTTFSCPWPYPMKTIPCVNNMAAKKVTLAKVIASIDVVFALFALVEVIYILRWKRINEEFSVIQDMEFCPVYILGQRECIGSVVKKIRNNQKENVEFCVKLVIQQPRSEEEQVAQTYDVQLDQLENYIDKIEDIFKPLENQATAAPKRILIVGRPGIGKSSLTKRILRKWGNVNVTDDFWYGKLVIRLELREFNHEKHKEQNISSLFKYGDGVPAKNNEGLYEFIKSNQEQVVIIFDGLDELDVDEDKFSEEKDRPFEDDEIMSVYSLYFRLLKGDFLPNVTIVTTTRRTGEALYLDVFDKFDRKLEILGFTKAEIEEFVKQRINQKKREEVWKVIKESAELLNICYIPASCNIVCRTLKKIESPVDSSLTLTEIYRLHVATMLRERHRSFKDKQIKKGYLFEPELPEEMQNDLNMLAKKAKSALDRNWSLVFDLNDVSSDLKDCGLLEMVEDKDRSLYSFPHLTIQEYLAAVHIFREVKNLSECLGRMVDEARWHLVIQFLAGLIGRELKREDLSSEKKDALVGTVYDTFVEWIAPLNESGKKDKKKPLLAVKCIHEIQDCETTKAASQKLDGGGTKGFNLRSSNIEPMDCKGLFDLLIHVQNLNALNLPGNHISDQGVRELCKLLRKVPLDQLNIANNLITNDGVKELCDVMVEEESSLRHLNISVNRFTDEGLKTLCEALKHPNCSLGSLDVRIFGDRITYGGVLSPEGRKYICDALRNENCRLVDLRVLWPVSFVESSDRRKKEFEDIRDLCDALRHVNCKLECLDLGWYGSSGEYGGRREQLEKASHVPGFRYKEGEKIITQHICQHGGKSWPYWFRKFANITCLGPHSLTLQVLASDSMTNLPPSTFPKHKIKFTVTEGDPEKFTVGVLDSPLRIALPFQIPLNLQDSFGNPTKPSGKYEVELTCSCLEITHEATQVKGNSLIIKGVTMIGNVPSHTGKDFTVKVSLSGIDGQQSLKMRLLPGPPASICSHPFEEQIEIENGTPLTLSVQVKDKAGNLTVQPKLNVVCKLTGASGLPTYLGDCSTSGKASLTGGNVVINKLVKTTKLKAKIELQHFKEIPAIEKVILVNPSSRAAVIEVHYKSPGDEKGIKMKNEDELSCIAGETITGLSFKIFDEGKRQLTIDNALAAKVKVNWISKFSRDIIKQGLLPEIKAPNTVNDTKFCQVSLGSALGVEFSFTLVPQPGKAANLKCTCQDNKIQLGETIKHDIIVTFSDRYGNQLMQLPNSPASPITVIGEGLCQANVKVVVNKDGTVSLKNIQFNDHVVGVKELTIKWENLTCYQRIEVKSGPPAKLRIISFNATQPIGVFSNTQFPKPIVLQLCDAFGNPCLENCVKVALNKDTGLKLNPAPSPQKTDAKGQVTFSHFEVSGQRGTYEVRIKALIGRTSIDANPISVRIDANPNKPVKLVVDRSKFQENYVVGSAIKDFSVHVLAEDDHVMKCNVKDFVLKLWSAEHNSSSTDPPSKAISFQPGKKSAADKENHYYFRDIRVPEQTGSYCMLLLYSTSGNIKLKSESIRVAVGAGPPVKLVPVGSLATPTVSNTQRATSRYLLRNTKFLLKDQYDNVTGTDLNGKIEISINKAPQTNEIPMLQGNVQKTEIPLVNGAATVQTLSIEQNTGGKDGQEYVLSFTVNVSGRRHSIPACTLPFLFYNDVRKQQQSAQLTKERDHLFETIKAYRSLFDTTRQLINEMKVAVHEASLAETKLRSELTRQSVPAQSLQSTESVDAFIAQLTTKRNTLQNTPRRQCTLSPGPRGEAGVLGKVAHLAEVMDNDIARVLSWHLSGDMDCVITLTTDKAKKVYRESKGAQQVLPLDSIYKRNLPEWNKPLPHERSRSSAQPAGHPIYARSALIFPQEQENCKIVFGMLLGDTIILDNLDCANTYRQEVVKYTHCPTILTRTGDRIRSNGKFGGLQNKAPQIERLRGVVFAAPLPLTYHTICTQLEQFKAYKQAMIKHSQAQDDYKVQLDQVQTPEMQSKHQECREAEIQLRRIEERLGMTPAQYEMPASPATMLQSALSNTSMSRSRPSRSAPGTRSTPLARPQPDPRSRGQTAAQQRVVNGGPSTPTRSRRSTATPDSYASPSKRPRRS

Uniprot

Uniprot term	Description
Q6P5D8	Structural maintenance of chromosomes flexible hinge domain-containing protein 1 OS=Mus musculus OX=10090 GN=Smchd1 PE=1 SV=2
A6NHR9	Structural maintenance of chromosomes flexible hinge domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SMCHD1 PE=1 SV=2
C6FG12	Protein NLRC5 OS=Ictalurus punctatus OX=7998 GN=nlrc5 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06470	SMC_hinge	SMC proteins Flexible Hinge Domain	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF05729	NACHT	NACHT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR010935	Domain	SMCs flexible hinge	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR038359	Homologous_superfamily	Connexin, N-terminal domain superfamily	Interproscan
IPR007111	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR038892	Family	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036277	Homologous_superfamily	SMCs flexible hinge superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22640	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0051276	Biological Process	chromosome organization	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0006302	Biological Process	double-strand break repair	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23113	SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala