Detailed information of BRAKERXEIP00000024065.1 in Muricea muricata

Genomic Location: chr11:11921073...11926860
NR annotation: XP_028406051.1, vacuolar protein sorting-associated protein 11 homolog [Dendronephthya gigantea]
Species Muricea muricata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9H270Vacuolar protein sorting-associated protein 11 homolog OS=Homo sapiens OX=9606 GN=VPS11 PE=1 SV=1
Q91W86Vacuolar protein sorting-associated protein 11 homolog OS=Mus musculus OX=10090 GN=Vps11 PE=1 SV=3
Q54YP4Vacuolar protein sorting-associated protein 11 homolog OS=Dictyostelium discoideum OX=44689 GN=vps11 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002707 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12451
all species →		VPS11_CVacuolar protein sorting protein 11 C terminalFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000547
all species →		RepeatClathrin, heavy chain/VPS, 7-fold repeatInterproscan
IPR024763
all species →		DomainVacuolar protein sorting protein 11, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23323
all species →		VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006886
all species →		Biological Processintracellular protein transportInterproscan
GO:0016192
all species →		Biological Processvesicle-mediated transportInterproscan
GO:0005768
all species →		Cellular ComponentendosomeInterproscan
GO:0006904
all species →		Biological Processvesicle docking involved in exocytosisInterproscan
GO:0007032
all species →		Biological Processendosome organizationInterproscan
GO:0007033
all species →		Biological Processvacuole organizationInterproscan
GO:0030674
all species →		Molecular Functionprotein-macromolecule adaptor activityInterproscan
GO:0030897
all species →		Cellular ComponentHOPS complexInterproscan
GO:0048284
all species →		Biological Processorganelle fusionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for BRAKERXEIP00000024065.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Muricea muricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Muricea muricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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