Gene detail

Detailed information of BRAKERXEIP00000024459.1 in Muricea muricata

Genomic Location: chr11:288159...313128
NR annotation: CAB3992156.1, E3 ubiquitin- ligase UBR5 isoform X2 [Paramuricea clavata]
Species Muricea muricata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERXEIT00000024459

ATGTCTTCGATATTTTTTACTGTTTGTCCTTTACCGGGCTCAGTGGAGCAACTTCAAGACGGTGAACTGCCATGTACAGTTACTGATTTGGTCCTTGGTCCAAACCATGTTGCATTTCTAACTGAGGACGGTACAGTTTGTCGGCAGAGATTCTCTGTATCACCTGAACAAGCCGATGTAGCAAGCAAAGAACCCGTTGCGGCAAGTGATGAGGGCAGTTCTGCCAGATCTTCATCTCATGTGGTTTTACACAGTATAGGTGAACGAGGACATGGAGAGAGTTCTTGGCTGTTGCCCTCAGGAGAGTCGTTTGCAGCACTGTCTGGTCATCCTGCATTGAGGTGGAGTTCATCCAACAATCCAGTAACGTTGCGTGCGTGCAGTCGTCTCGCTACGCGTGGCCGCGGTCGTGTTGTGCGTGCTCGTGGACGTGTTGGTGCTTCAGGCTGGCTTACGTCACGTAGTGTAGTCCCAGCATCAGCTGTACCAGAAGAACTTATTGCACAGGCTCAAGTGGTTCTACAAGACAAATCACGAGCGGCGATTGTTAGAGAGTTACAGCGGACGAATTTGGATGTGAATCTGGCAGTGAATAACCTCCTAAGTCGCGATGAGGAAGACGGTGATGAACAAGAAGAAGGCGACTCATACATTCCGGGCGAAGATTTATTCTCAATCCTGGAAACGGGCCTTCACCCAGACGACCCTGCGGTCATGATGGACGCTGACAATATACTTCCTGAAGATCTCATCTACGGCAGTCTTCCACGGCGCATGGGCAGCAGAGCAAGTCGTTTCTTCGAGCGAGAGTTTGAGGCCGAGAGAGAGCGGGACCGAGAGAGAGACCTGCTGCGACGCGAGCGATGGTGGAGTGGCCTGGGACTGGCTGAGAATAGCGGATCCGGGGGGAGTAAGAACAACAATAACGCATCGCAAGACAAGAATTCTGCGAATAATCAAGTAAAAAAGAGCGCGAAGGAACCTGTAACGTTCATTGGAGATTTGGAATATTGGCCAGGCGAGAAGACGTCGATGCCGAGATTTGTGAAGATAGCAGCGATGTACTCGGAATTAGTCTGTTTAGACAGTGAAGGAAATGTACATCAGTGGAAATGGAGTGATTCTGCGCCGTTTTCGCCTCTGAATGATCGTGGAACGAAGATCACACATCCTCGGACGAAAACACTCGGGTTAATGAACGAGAATGTTGTTAAATTATCAGCTTGTTCATCTCGAGCGACTGTTTCCACGCGTTCAGGCAAGGTTGCCACTTGGTTGGATGAGACTCTGTCAGCGGTCGCTTCGAAATTGGAACATTCTGCCAAAATCTTCCCAGATTTCGAGAAAGAGAAAATTCACGAGATCTTCACGTGTCCCCTGTACACCTGCGTACAGACTGTACCTGGCAACCTGTATTGGTGGGGGGTGCTGCCGTCTGATCAACGTCGTAAAGTAATGGAGAAAGCGAAAGCACGTGCAAAAAAGGATCGTATTAGCGGAATGTCGGACATTGTTGTCGGAACCCAGGTTTGTATGCGAGCCAGTCCTTTATACAATGCCGGAGCTTTAGCGTTCAACGTGGGGAGCGAAACACCGCGAGTGGGTCAAGCTGTTTCATCATTGTGGAACTTTGCTGTTAGTAAGCTCCGCTTCAAACTCATCACATCAAACGAAGAGAAAGATAAAAAGAAGGCTAGTCCTGGGTCTGCGAGTGTTGATCAAGATGAGCGTGTGCCTGAAGTTGGCTCAAAACGTAAAGCGAGTGATGACAGCGCGAGTAAGGAAGAGGACTGGGACTTGAAGGAAGTTGTCTTTGTTGAAGACAAACAAAATTCAGCCATTGGTGATGTCGTAAAGGTTGATGGCTTATACGCTGCTGTGTTGTTTCCTTCTAAAGAAAATCCCTCACTACCGCCCTCATCTCCCACTGATCCCATGTCACTTTTCAAGCACTGTCGCCTTGTTCGCAAGGACGAACTGCAGATTGTGAAGTCAAGCACTAACCACAAAGTTTTTGATTGTATCCAAAAGTCTCCGAAACCTTTAGTTCTCCCTTCTGGGGCAACACCGATGACTGTTGCAGTCGCCAATGACGGTGTCCATGCTGTATTAAAGCGAGGCAGTAAGATATCGTACGCGTTGTTCAATCTAGCCAATGGCAGGCCAGAACCAGGCGGTCAATTCCCAGCAGAAACTGCTTGCTTTTTGTCCAAGACATCAACCACTCCGATGCAGCTAAATCCCTCTGTCGTGGGTCCGGTGATGGTACTGCAAGATTCGACAGGTGGTTTAATCCCTCTTGCCAAGGATAGTCTGGGCGGCGTGAAGGAACCTGTTTGGTTGGGTCTTCCGCCAGTGCATATTTTACGTATTGGTGTTTCATCCAGTAAGGACAACAAGAAAGTTGCAGTCGTTGCTCTGTCTTTGCCGAAACAAAAATTGATTTCCGATGTGGTTGACCTCAACGAAACTGCGGTAGTGAATATTGTGGATTTTCTGACAACTCAGTGTCCTTATAAAATTCCCGAAGTTCTTAAAGAAACTTGCGATGGAAATCGGAACATTCTTCATGTCTGTGTGTCTTACGCTGTACCCTCCGAGACGCGTGAAGCTTCTAGTCGTTCAACCACAAATACACCTCCAGGCGCCTCAGGTTCAGGTGCCAGCGGTGGTAGTAGCCGCAGTATCAGCATACGAGAGATGATGCAGAAAGCAGTCATGGCCGCGAGAGCAGCGAACCTTGATATTGACGAGGATACCGCAATACCTACCTTACACTGGCCTCCTGATCCTCCCACTAGTAATACTACGTCAAGTACACCGGGAACGACATCCGTTGCTCCTATAAGCACTGGCACTGCTGTTGCCGAACCTGCGCCCGCAGTCACAGTCCCACCAGGCGCTCCTGAAGAAGACAAACAAACGAAAGCTCTCAGGATATTAAAATTTTTCTGTAACAACGAGGGAATGAAACGATTTTTGCAACCGTTGCTTGCAGCCAAAGACGCTGACGGCTACACGCCGTTTATGTTAGCAGTATGTCGCCGGGCATACCCTTCGGCGTTGTTTCTTTTTGATGTCGCCAAGGAGTTCGCAACAGATCCTGAGAGCAAGACTGTCAACCAAGATCGACTTCTCTCCATGATATGCCCCGCTGACACATCGGGAATGTCGTCGCCGTTGTATTTGCTGTGTTGTAACGACACGTGTTCGTTCACGTGGACCGGGACCAAACATATCAgacagaatatatttgaatgcCGAACGTGCGGTCTGATGGGTACTCTCTGCTGTTGCACAGAATGTGCGAGAGTTTGTCATCGAGGACACGACTGCAAGATCAAGAAGAAACCCCCGATCGCTTACTGTGATTGTTGGAGGAAATGTCAATGTAAAGCTTTGATACCTGGAGTTGAAGCAACGAGAACAGAGTTACTTAAGAAACTGGTCTCTGAGACAGATCTAATTTCGAAACCGAATGGAAAGGGCGAACATATCCTGCTATTTTTGGTTCAAACAGTATCCCGTCAGATCACGGAGCAACGTGCGTATTGCCCCAAAGGCATGGACGTGCATTCGAACAAGCGGCGTGTCCAGGCAGCGGTTGCTGCGGCAAAAGGGAACCCTAACTTCCCAGATCATGATTTGGAGCCGCCAAAGTTTGCCCGGCAAGCGCTGGAGTTGATAATCAAGGAATGGAGCGCGGTGAAAAATATGGTGCTCAGTGGAGCGAAGTCTACTGAGAGCGATGTCCGTCCTGATGCATTTCAAAGTGAAAATCTCGCGCACTCCATGTTGACTTCTCAAGAACAACAACAATATTTGAATAACCAAGATGGCACGACTAGACTGGATAGCTTTACTCATTGTCTCGTTAGTAAATGCCCCAATGAGATTGTCGATCAGTTTCTTAGAACATTGATCACCGCTCTGTCCGGTGATGCAGAGTCTGGTAACGAGGAAGCGGTGATGGTTGCTAAGAGATTCGTTCGCTCTGTTGCCAGGGTGATGGTTGTGCTGACGTCAGAAAAAACACCTTCAGTTGCTAAAAAGAAATTatTGGCTTTCCAACAACTGAATAAATGCAGAAAGGTTTTCCAATCCATGTTAAATATCGCCATCCCAGAACTTATACACATGGCGAATTCTCTGATTGCGCCCGTACGCCTTGGTGTGTGCCGGCCAGCGGGGCCATTCTCGTACCTCACCTCCGAAAACACGACGAGTAACGACGAACCTTCGATCGGAGAAGAGTTGTTTAATATAGAACCCATGCGTCGCCGGCCGTCTACGCCTTCTTCCGAACCAAGGCGTGTCCTGCGAGATCGTCTCGATTCTGACTTGCTTCCAGACTCCCAGGTCGAGCAATTGGAGGTGGCCGATCCACAGCCATCGGGCGATGTTGGGGAATTGCATGATATTGAGGTTGTCGACGGCGCTGAAATTCAAGCTTTGGTATCGGACTCTGGGATTGATTTGCTAAACAACACCAGCCAACCGAGAGGTATTGCAAGCTCGAGTGAAGACAACCCCCCTGATCAAGCCGCCATTTCTGACCCTACTCAAGGTTCTCGTGCAAGCAGCGGCGGTGATCTGTCTCGCGGGCGCAGACGAGCGAGGTCTACAGATGGCGGGGCTGATCAAGAGAATGGTAACGAGTCAGATATGGACCTGGAATTTCTCGCTGAGACTGAGAGTGACAGTGATGAGGATGGTGTTCCCCCCGGTGAGGACCGCGTTAGACGTCTCGATACGGGGAGTTTGGACCGTCCACTCAGTCCATGTATTGTGACTAAAGGTCGAGTGCTGTACTCAGATGATGACTCGTCCTCTGCTGAAGAAGATGTCGTGGAAAATGATATTGATCAAGTGGAGGATGACGAGGAATTGGATGAAGAAGGAGGTGGAAGAGACGAGAATGAAAATAGCGGAGCAAGAGTCCTGGATGTTCAAAGAGCTGGACGCGAGACAAACGCGACACCTCACGCCATGCACTGGGCGCTGTCGAACTCTGCCGTACCTGGAGTGACACACAGCTCGACACCTGGCCTCTCTTCTTCGTTGCTGTATGGTGAACCAACGCAGCATAGTGTTGGTGGAAGCGGTAGTGCTGCCGCAGCTGCCTCCGCACTGACGACAGCAGCCTCTGCTTCTGAATCATCCAGTGCCATAGCGAGATCTCATTACAGTGCTTTGAACTCGGCCAGTGCGTTGGCGAGGTTGTTTGCAACACTTGTTCGTGAGATCACAGACCTCTTGATTGGAGGGTACAGAACATTGAAAGTTCCAGAACTGCATTCGCTCTGCTGCATGATGGACCGGGAACTCAGGGATACTTGGGAATGGTTATGGACAATCATGGAGTGTACAGAGAGTCAACTAAGGTTCGGGACATCCTTAGCAGCTGCTTCAGATCCCTCACATCCCGGACATCCCATGTACGAGAGTCAGGGGAAAGAGGGGACATTAAAGAGTAAACGTACGGCTGATGAAGGAATTTCTTTAGATAAAAAAGCTAGACGTCATGGTATTTATAACAATGATATTGCAAGACAAGATTTTCTCACTTATGTCCTTTCACTCATCCGAGGCAGTGAGAATGAACATGCTGATTCCCTGCCTAAAGTCGATGTCGCGTCATTACGTCATGTTGCGTTTGTCCTAGATGCCTTGATTTACTACTTGCGGAATAATCCATCCGGTACTCTTAATCTTACCAAACGGACACGTTTTGAGCTATTTGACGACAGCAACATCACTACAGATGACGAAGGTGCTGCTGATATCGAGGACGAAGATGACGATAATGACGTCAGTGATGACGTCACAGGATTACGTGACCAGCAACGGTTCTTCCATCGCAGTGACTCAACCACCGTCCTGGGATGCGAACCCCCTGAACCCCTACATACCCCTTTATGTGAGTCTTTACCCCTGGCGGAGAAACCACATTTACTGAATAGGAACGCTCGTCGGGAACAGTTGTTTGGAGCTGTTCAGGAACCTACGTTTGCTGAAGGACAACACGGCAGTCATTCAAGGACACTTGGACTTAACTACGCGTTCAAGAATGACAAAGATACCAAAGACGATAAGAAAGACAATAAAGTGCAGACAGATGCTTCAGCCAGCGAGTCAGAGGAGGCAGAAGCTAGCGCTAAACCAACAACCAGCAGCAGCGAGCCTTGGCGGTCATCAGGCCTCGCAAATTTCAAGATCATCGGGGTTTTGCCTCCTAACTTTCTGCTGGGAAGATGGAGGTTATGCTTGGAGTTATTTGGTCGAGTTTTCCTCGAAGATGTCGGAGCTGAACCGTCGTCTGTTCTTAACGAGCTGGGAAGATTTGATGTGAAAGAGATCACATTCAGACGCGAGATGGATCGCTTGAAGAACACAAGTCCGCGAGATCTGACATTGGAGCTGGAGCGCGGCCACCACCAGTTAATTCAACAAACAATTCGTCAACTCAATTCCCACTTTGGTCGACGACCTTCAACATGTAAGCCAGCGGTAATTCATCGTGTTAAAGTGACGTTTAAAAACGAGCCAGGCGAAGGAAGTGGGGTGACACGGAGCTTCTTCACAGCGATTGGGAACGCATTCATGTCTGCCGATAAATTGCCAAAGTTGGAGAATCCTTCGATGCCTTCTGCAAGTTCTTCAATCATGAGCAAAATTCGTGCTCAAGAGCGTGAACGTGAGCGAAGAAAAAATTTCCGTGCTAGAAAAGATCGTTTGCGTGATCGCGATCATCCAGAAGGTTTCCAACAGCTCAATCCTGACGCCAGGCCGTTCTTCTTCAATCGCGGTGATAGCGCGGATAGTGATGACGGCGAGGGGGATTCCTTGCCCTCTCATAGACACTCGATGGGGGAGAGACTCTACCCTCGTATTCAGTCCATGCACCCTGCATTTGCCAGTAAGATCACTGGAATGTTTCTGGAGCTCTCTCCTTCTCAACTCTTGCTGTTGTTAGCGAGCGAGGATACACTCAGAACGAGAGTAGACGAAGCTGTCGAACTTATATTAAAGAAAAACAGAGAAACAAAGAAAGACGAGCCCGATGTCAACACACCTTCAACGCCTATAGTGAACTCTGCTCCAGAAGTCCCCCCAGTCGAGGAGGACAATGCAGCATTGTTTTATCAACCTGGTCATTCTGGTTTCTACTCCCCTCGGCCGGGAAATAATAGCGCCGAGAGACTGAACGCTTTTCGTAATGTTGGAAGGGTAATTGGTCTCTGCCTTGTACAAAATGAAATCTGCCCAATCACATTAAATCGCCATGTTATCAAGTTCCTAATTGGGCGCTCGATTGGTTGGCATGATTTTGCATTCTTTGATCCGACAATGTACGAGACACTTCGGAAGTTAATCGTAGATGCCGGACTCCCGAACGCTACCGATATGTTCTCGACGTTAGACCTGACATTCAGTGTAGAGTTGAGCCCGGACGAAGGCGGGAAACGCGTTGACTTGATGCCAGGAGGTCAGGAATTCGCTGTTACTCCCGCTAACGTGCGCAGTTATGCTAGAAAATATGCTCTACAGAGGATGGAGGTCTGTGCCAAAAAAGCTTTGAAGGCAATGCGCGCTGGTTTACTCGACACAATCCCAGCAAGCTCGTtggatggtttaactgctgaaGATTTTCGTTTGCTTCTCAATGGTACTGGTGAAGTTGATATCCGTCAACTCATGGAATATACTTCATTCAACGACGAGTCAGGAGGTGCTGGCTCGGAAAAGCTTCTTAAATTCAAGAAATGGTTCTGGTCAATACTGGAGAAGATGCCAATGGCACAAAGACAGGATTTGATGTATTTCTGGACATCCAGTCCTTCTCTGCCTGCGAGCGAAGAAGGTTTTCAACCCAAACCCTCGGTGACAGTAAAACCCGCGAATGATCAACAACTACCCACAGCAAACACCTGTATATCCCGTCTGTATATCCCTCTATACTCCTCAAAAATCATCCTCAAAAATAAACTTCTTATGGCCATTAAAACTAAAACTTTTGGATTTGTATAA

Transcript

BRAKERXEIT00000024459

Protein

BRAKERXEIP00000024459.1

MSSIFFTVCPLPGSVEQLQDGELPCTVTDLVLGPNHVAFLTEDGTVCRQRFSVSPEQADVASKEPVAASDEGSSARSSSHVVLHSIGERGHGESSWLLPSGESFAALSGHPALRWSSSNNPVTLRACSRLATRGRGRVVRARGRVGASGWLTSRSVVPASAVPEELIAQAQVVLQDKSRAAIVRELQRTNLDVNLAVNNLLSRDEEDGDEQEEGDSYIPGEDLFSILETGLHPDDPAVMMDADNILPEDLIYGSLPRRMGSRASRFFEREFEAERERDRERDLLRRERWWSGLGLAENSGSGGSKNNNNASQDKNSANNQVKKSAKEPVTFIGDLEYWPGEKTSMPRFVKIAAMYSELVCLDSEGNVHQWKWSDSAPFSPLNDRGTKITHPRTKTLGLMNENVVKLSACSSRATVSTRSGKVATWLDETLSAVASKLEHSAKIFPDFEKEKIHEIFTCPLYTCVQTVPGNLYWWGVLPSDQRRKVMEKAKARAKKDRISGMSDIVVGTQVCMRASPLYNAGALAFNVGSETPRVGQAVSSLWNFAVSKLRFKLITSNEEKDKKKASPGSASVDQDERVPEVGSKRKASDDSASKEEDWDLKEVVFVEDKQNSAIGDVVKVDGLYAAVLFPSKENPSLPPSSPTDPMSLFKHCRLVRKDELQIVKSSTNHKVFDCIQKSPKPLVLPSGATPMTVAVANDGVHAVLKRGSKISYALFNLANGRPEPGGQFPAETACFLSKTSTTPMQLNPSVVGPVMVLQDSTGGLIPLAKDSLGGVKEPVWLGLPPVHILRIGVSSSKDNKKVAVVALSLPKQKLISDVVDLNETAVVNIVDFLTTQCPYKIPEVLKETCDGNRNILHVCVSYAVPSETREASSRSTTNTPPGASGSGASGGSSRSISIREMMQKAVMAARAANLDIDEDTAIPTLHWPPDPPTSNTTSSTPGTTSVAPISTGTAVAEPAPAVTVPPGAPEEDKQTKALRILKFFCNNEGMKRFLQPLLAAKDADGYTPFMLAVCRRAYPSALFLFDVAKEFATDPESKTVNQDRLLSMICPADTSGMSSPLYLLCCNDTCSFTWTGTKHIRQNIFECRTCGLMGTLCCCTECARVCHRGHDCKIKKKPPIAYCDCWRKCQCKALIPGVEATRTELLKKLVSETDLISKPNGKGEHILLFLVQTVSRQITEQRAYCPKGMDVHSNKRRVQAAVAAAKGNPNFPDHDLEPPKFARQALELIIKEWSAVKNMVLSGAKSTESDVRPDAFQSENLAHSMLTSQEQQQYLNNQDGTTRLDSFTHCLVSKCPNEIVDQFLRTLITALSGDAESGNEEAVMVAKRFVRSVARVMVVLTSEKTPSVAKKKLLAFQQLNKCRKVFQSMLNIAIPELIHMANSLIAPVRLGVCRPAGPFSYLTSENTTSNDEPSIGEELFNIEPMRRRPSTPSSEPRRVLRDRLDSDLLPDSQVEQLEVADPQPSGDVGELHDIEVVDGAEIQALVSDSGIDLLNNTSQPRGIASSSEDNPPDQAAISDPTQGSRASSGGDLSRGRRRARSTDGGADQENGNESDMDLEFLAETESDSDEDGVPPGEDRVRRLDTGSLDRPLSPCIVTKGRVLYSDDDSSSAEEDVVENDIDQVEDDEELDEEGGGRDENENSGARVLDVQRAGRETNATPHAMHWALSNSAVPGVTHSSTPGLSSSLLYGEPTQHSVGGSGSAAAAASALTTAASASESSSAIARSHYSALNSASALARLFATLVREITDLLIGGYRTLKVPELHSLCCMMDRELRDTWEWLWTIMECTESQLRFGTSLAAASDPSHPGHPMYESQGKEGTLKSKRTADEGISLDKKARRHGIYNNDIARQDFLTYVLSLIRGSENEHADSLPKVDVASLRHVAFVLDALIYYLRNNPSGTLNLTKRTRFELFDDSNITTDDEGAADIEDEDDDNDVSDDVTGLRDQQRFFHRSDSTTVLGCEPPEPLHTPLCESLPLAEKPHLLNRNARREQLFGAVQEPTFAEGQHGSHSRTLGLNYAFKNDKDTKDDKKDNKVQTDASASESEEAEASAKPTTSSSEPWRSSGLANFKIIGVLPPNFLLGRWRLCLELFGRVFLEDVGAEPSSVLNELGRFDVKEITFRREMDRLKNTSPRDLTLELERGHHQLIQQTIRQLNSHFGRRPSTCKPAVIHRVKVTFKNEPGEGSGVTRSFFTAIGNAFMSADKLPKLENPSMPSASSSIMSKIRAQERERERRKNFRARKDRLRDRDHPEGFQQLNPDARPFFFNRGDSADSDDGEGDSLPSHRHSMGERLYPRIQSMHPAFASKITGMFLELSPSQLLLLLASEDTLRTRVDEAVELILKKNRETKKDEPDVNTPSTPIVNSAPEVPPVEEDNAALFYQPGHSGFYSPRPGNNSAERLNAFRNVGRVIGLCLVQNEICPITLNRHVIKFLIGRSIGWHDFAFFDPTMYETLRKLIVDAGLPNATDMFSTLDLTFSVELSPDEGGKRVDLMPGGQEFAVTPANVRSYARKYALQRMEVCAKKALKAMRAGLLDTIPASSLDGLTAEDFRLLLNGTGEVDIRQLMEYTSFNDESGGAGSEKLLKFKKWFWSILEKMPMAQRQDLMYFWTSSPSLPASEEGFQPKPSVTVKPANDQQLPTANTCISRLYIPLYSSKIILKNKLLMAIKTKTFGFV

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80TP3	E3 ubiquitin-protein ligase UBR5 OS=Mus musculus OX=10090 GN=Ubr5 PE=1 SV=2
O95071	E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens OX=9606 GN=UBR5 PE=1 SV=2
Q62671	E3 ubiquitin-protein ligase UBR5 OS=Rattus norvegicus OX=10116 GN=Ubr5 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002341 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 activity\|HECT · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity\|UBR-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00632 all species →	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan
PF00658 all species →	PABP	Poly-adenylate binding protein, unique domain	Family	Interproscan
PF11547 all species →	E3_UbLigase_EDD	E3 ubiquitin ligase EDD	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009091 all species →	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan
IPR000569 all species →	Domain	HECT domain	Interproscan
IPR035983 all species →	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR002004 all species →	Domain	Polyadenylate-binding protein/Hyperplastic disc protein	Interproscan
IPR024725 all species →	Domain	E3 ubiquitin-protein ligase UBR5, ubiquitin-associated domain	Interproscan
IPR047503 all species →	Domain	E3 ubiquitin-protein ligase UBR5, UBR-box	Interproscan
IPR003126 all species →	Domain	Zinc finger, UBR-type	Interproscan
IPR036053 all species →	Homologous_superfamily	PABC (PABP) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46276 all species →	E3 UBIQUITIN-PROTEIN LIGASE UBR5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0034450 all species →	Molecular Function	ubiquitin-ubiquitin ligase activity	Interproscan
GO:0090263 all species →	Biological Process	positive regulation of canonical Wnt signaling pathway	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10593	EDD1, UBR5; E3 ubiquitin-protein ligase EDD1	EC:2.3.2.26	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Muricea muricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Muricea muricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →