Detailed information of BRAKERXEIP00000024844.1 in Muricea muricata

Genomic Location: chr12:8746156...8780300
NR annotation: XP_028395044.1, midasin-like isoform X2 [Dendronephthya gigantea]
Species Muricea muricata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9NU22Midasin OS=Homo sapiens OX=9606 GN=MDN1 PE=1 SV=2
Q869L3Midasin OS=Dictyostelium discoideum OX=44689 GN=mdn1 PE=3 SV=2
Q12019Midasin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MDN1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001651 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21108
all species →
MDN1_4thMidasin AAA+ ATPase lid domainDomainInterproscan
PF17865
all species →
AAA_lid_5Midasin AAA lid domainDomainInterproscan
PF17867
all species →
AAA_lid_7Midasin AAA lid domainDomainInterproscan
PF07728
all species →
AAA_5AAA domain (dynein-related subfamily)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR048617
all species →
DomainMidasin, lid domain 4Interproscan
IPR041190
all species →
DomainMidasin AAA lid domain 5Interproscan
IPR040848
all species →
DomainMidasin, AAA lid domain 7Interproscan
IPR011704
all species →
DomainATPase, dynein-related, AAA domainInterproscan
IPR003593
all species →
DomainAAA+ ATPase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48103
all species →
MIDASIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000027
all species →
Biological Processribosomal large subunit assemblyInterproscan
GO:0000055
all species →
Biological Processribosomal large subunit export from nucleusInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0030687
all species →
Cellular Componentpreribosome, large subunit precursorInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0016887
all species →
Molecular FunctionATP hydrolysis activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for BRAKERXEIP00000024844.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Muricea muricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Muricea muricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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