Gene detail

Detailed information of BRAKERXEIP00000025053.1 in Muricea muricata

Genomic Location: not available for this species
NR annotation: XP_028407766.1, spectrin alpha chain, non-erythrocytic 1-like [Dendronephthya gigantea]
Species Muricea muricata · all data for this species · gene families

Sequence

CDS

BRAKERXEIT00000025053

ATGGGTGAACTCCTGTTGTACTGGAATGGTGATTTTGAACAGCTGCAGCAATTTATGAATAAAAATGCTGAGTTGAAAAATGGTGTTTGGAGCTCTCCAGGAGGAGACAAAAAGACATACAGTGATGGTCACACTTTGATTTCGTGGCGGAAAGGCAAGAAATTGTTGCAGATTGAGGGCAAGGAAGATAACTTGATAAAAGCTAAGTTATGTTCAGCTATATGTAACGTGAATTTTGTCTCCTCGGGGGAGGGAACTCGTGCTATTGTTAGTGGTCAAAAAGACGCTTCCCCTACGTTGTCTACCGAAGCGGACAATTCTAACCCTGATGCAGCAATCGTGGGAAAATCGTCTAGGCCTAGCATTGCTTGCCTCAGCGAAATGGGAGAGGTTTCCGTGGCGGTTGGCGAGCGACCTTATAATTGTAGGAAAGAAATGAATTTGGTAAACAGTCCATTAGTGGATCAATCTCCATTATCATATGAATATCTGATGCATAAAACTTCCTGTGAAACCGACACCCTTGTTTCAAATGCTCCCAAAACACCAATAATTACCAATTCAAATTATATGGAAAAAGCATGCCAAACAACTGTTGACGAATTTAATTATTCTTTAAACTCGCAAAAAACCTACGTACACCATTGTATATGTCAACAAGGCTATACCGCCATCGAAAACATTAAAAGTAAAATTTCTGATCTACAATCATCTGTAGACTCTTTCGAAACTTCTTTGGGCGATCTTGACTCGATATTGTTTTCGTACAACAAAGCCGCAGATTTGAATGAAAAATACTTAGCGGAAATTACTGAATATAAGAATCATATTTCGTGCCTTAAACAGCAGCTTACTACAGTCAAGGAAGAGAGAGATTCATTACAACTAGCTACGAGTCTCGTGGTTAAAGAGCCTGAACGCTGTAATAGCAATAATCCTGTCCCAAATCAGAATACAATCTTAATAAATGGGAGACAAAGTGCATTCATGGATAATAAAAACTCTTGTCAAATAAACAATAAGCCTGTCCGGAGCAAACGTTTTCGGAATACATTTGAACCGCTAATCAATGAGGCAAATCATGTTGATGCCGAACCACACGAGCCGCAAATTGAGATAATTAAATTAGATGATTCTTGTGATGGCTCTAAACCAGTCAACTCCCGCCAAACCATCAACAAACATGTTACAAAACCACCAAAAAATGAAGTGGCCTGCCCTTTTTTAAGGAGAAGAGGTTCCTGCTTGAAAGGAGCGAATTGCGACTTCCTACATCCCCTAAACTCCCAATTATCCGCCCAAGAGAAAAGAGTACCCTCATTTGCTCCAACCCATCCATTTGTTCCTCAGCATAATGTCACGTTCGAATCAGGTTTGCAAGCTTTTGAACAAGAAGGCGTCCAGAAAGTGACTACACTGAAAGATGATTTGGTCAAAGCTCAACATGCTCAGTCGCCTGCTATCATCAGGAGAAATGATGAACTCGTGCAAAGATGGCAAGCTTTGCTCGAAGCATCTGCGGCTCGCAAGGACCAGCTGTTGAAATCGCaagacaagtataagaaagTGGAAGACATGTATTTGCTGTTTGCCAAGAAAGCTTCAGCCTTCAACAGTTGGTTTGAAAACGCCGAGGAAGATCTCACAGATCCCGTTCGCTGTAATTCCGTTGAAGAGATAATGGTGTTGCAAGACCAACATGAGCAATTCCGTGAGTCCCTGCAACAAGCTGAAGATGACATGAGAACATTGCGAAGACTGGACAAACAGATTAAGAGTTATCACGTGTCAATTAACCCTTACACCTGGTTTACAATGGAAACTTTGGAAGAAACTTGGGAAAGTTTGGAAAAGATTATCCAGGAACGTGAAATGGACCTTCGCAAGGAAGCGGAACGTCAACGCTACAACGATGAACTGAGACAAGACTTCGCGCAGAACGCAAATTCATTCCACGCGTGGCTCACGGAGACAAGGTCAGTGATGGTTGACAGTCAGGGGGATTTGGAAGACCAGCTTAAGGTGATTCAAGAGAAATCCAAAGAAATCCAAGAACATAAAGAAGAATTGTCTGTTGTTGAGGATCTTGGCGCTCAAATGGAAGAAGCGCTTATTCTTGATAACAAGTACACTGAACATTCAACAGTTGGTTTGGCGCAGCAATGGGATCAGTTGGATCAACTTGCTATGAGAATGAGGCACAATCTTGAACAACAGATACAGGCACGAAAGATGACTGGGGTACCTGAGGAAACTCTCAAAGAATTCGCTGCGAACTTCAGGCATTTCGACAAGAACAAATCCCAGTTCTTGGACCATCAAGAGTTCAAATCATGCTTACGTTCACTTGGTTATGATCTGCCCTTGGTTGAAGAAGGTCAACCTGAACCGGAGTTCGAAGCCATTCTTCAGACAGTCGATCCAAACGGTGACGGTGTGGTGTCGCTGAGCGAATACATGGCGTTCATGATCAGTCGTGAGACGGAAAATGTTCACTCTAGCAAAGATGTCGAAGACGCCTTCAAGGCTTTGACTGACGGAGCTGACAAAGACTTTGTTACTGAGCAAGAACTGTATCAGTCCTTGTCTCGCCCTCAAGCAGAATATTGCGTCCAGCATATGAAACCCTACGTGGACAGTCGTGGCCGGGAGGTGCCGAACGTGTACGATTACAAGACGTTCTGTTCCGAGTTGTTTGCGAACTAA

Transcript

BRAKERXEIT00000025053

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13813	Spectrin alpha chain, non-erythrocytic 1 OS=Homo sapiens OX=9606 GN=SPTAN1 PE=1 SV=3
P07751	Spectrin alpha chain, non-erythrocytic 1 OS=Gallus gallus OX=9031 GN=SPTAN1 PE=1 SV=3
P16546	Spectrin alpha chain, non-erythrocytic 1 OS=Mus musculus OX=10090 GN=Sptan1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003297 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF08726 all species →	EFhand_Ca_insen	Ca2+ insensitive EF hand	Domain	Interproscan
PF00435 all species →	Spectrin	Spectrin repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR014837 all species →	Domain	EF-hand, Ca insensitive	Interproscan
IPR018159 all species →	Repeat	Spectrin/alpha-actinin	Interproscan
IPR002017 all species →	Repeat	Spectrin repeat	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11915 all species →	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030054 all species →	Cellular Component	cell junction	Interproscan
GO:0030864 all species →	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0042995 all species →	Cellular Component	cell projection	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05699	ACTN1_4; actinin alpha 1/4	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.