Gene detail

Detailed information of BRAKERXEIP00000025098.1 in Muricea muricata

Genomic Location: not available for this species
NR annotation: CAB3979872.1, serine threonine- kinase ppk4-like [Paramuricea clavata]
Species Muricea muricata · all data for this species · gene families

Sequence

CDS

BRAKERXEIT00000025098

atgGAAAACCCGCACTATAAAAATTACTTGACTACTGGAAAAGAACGAGCGGATAAATTATATGAAACATTCGGATATATCAAATTAGGACATGTATATAAAGAAAACAATCAGATCCCAACGTCAATTGAATGCTAtaaaaaagccttggaaatcgCAAGAGCACAAGATGACAAAGAAAACGAAGCAAGAATATACATTTGGTTGGGAAATGCATATGCAGTAAACAATGAAATTCAAAAAGGAATTGAGGTTTTTGAAAAAGCCTTAGAAATTGCTAGACAACGCGAAAACCAAGAAGTTGAAGGAAACGTATACATTTGGTTGGGATGGGCATACAAAGAGAGTAATCAAATTCAAACGGCTATTGAATGCTTTCAACAAGCCCTAGCAATTGACATAAATAGAGGAGATAAAAATAATCAAGCGAAAGCATACATTTGGTTGGGAAATGCATATGAAAGGAATGGTCAAGTTCAGACAGCAATTGAATGCTGTGAAATAGCTCTGGAATTGGCAatcgaacaaaaagatagaaacgTTGAAGCAAATGCACACATTTGGTTGGGATGTATCaatgaaaacaacaataaaatCCAGTCAGCAATTCAGCATTATAAAAGCGCCCTCAAAATAACAAAAGAGCAAGAAGACAAGAAAAATGAAAGAACCGTGCATACAAGGTTGGCACACGCATATAGAAAAATCAATCAGATTCAAACCGTAATCCAGCACTATGAACAGGTGTTGCGAATAGCAAAAGAACAAGCAGATCAAGAAGATGCAACCAATGCGTACATTGGTCTGGGCCATGTATATCGAGACAACAAtgagattcaaacggcaatcgAATGCTACGAGAAAATTttggaaattgcaaaagaacGAAAAGATAGAGAGATGGAAGCAAAAGCATACATTTTGTTAGGATGTGTACATAAAAAATgcaatcagattcaaacggcaattcaGGAGTATACGAAAGCCTTGGAAATAGCTAAAGAACGAGGCGATAAATGCACTGAAACAAGCGCATACATTAGGTTAGGAGATACGCATAgagaaaacaatgaatttgaaGCTGCAATTCAGCACTATGAACAGGCGTTGGAATCTGCAAAAGAACAAGGAGATAAAGAATGTGAAACAAGAGCGTATATAGGGTTAGGGCATGCATATCGAGAAAATAAACACGTTCAAACAGCAATTGACCACTTTGAAAAAGCTTTGAAAAGTGCAAGAGAACAAGAGGATCAAGTTGCCGAAACAAAGGCATATATTTTGTTAGGATATTCATACATGCAGCATAATCAGATTCAAATGGCAATTAAATACTATTGCAAAGTCTCCGAATTGGCCAGAGAACAAAACAATAAGGAAATTGAAGCTAACGCATACATCTGGTTAGGATTTGCCCATAAAGAAAACAACCAGATTCATACAGCAATTCGACACTatgaaaaagccttggaaatagCAACAGACCAAAAAGATAAAGATACAGAAATAATGGTGCGAAATGCAATCGAGAAGTTTGCAAGATTAGGAGATGCAGGTAAAATCAATGAAAACTACAATACTAGTGGTGAAACAAATGTTGAAGAATCCGATACATATACGGATAACGATAGAGTTTCTTCTGCTAAACAATTCTTGACCTTGGGGCATTCATACCACGTTCATGGCCGAAATGAAGAGGCCATAGAAAACTATGAAAGAGCAGTTCAAATTGCGCTTGGAACAAATCACAGCCACCTCGCAGCAGTAGCTTACCAGCACTTGGGAAATGTATATGCTGCTACATCTGAGCATCAAAATGCGATCGAGTGTTATCAGAAGGCGCGTAGATTATCTCCAGGTTTCAAAGCAGATGATGTCGAAGTAGAAGCATATCTATGGTTAGGTTACAAGTACCACGAGGCAGGACAGTACAACGAATCCATAGCATATTATAAACAAGCTTTAGAGCTCGCTTCACAGTTCGGGTACACGGAACTGAAAATTAACGCTTATTTGGGATTAGGAAGCGCATTTGGCTATAGTGGCGATCTTGAATCTTCCCGAAGCTATTGTTTTAAAGGTCTGACATTGTCAGAACAAGTCACCGACATAGGTCTCCAAAAAAAAGCACATGTAGAATTGGGATATATATACTACAAAAGTTGCATGTTCGAGGCCGCAGTTAATTCGTATCGTGAAGTTCAAAACATTTCACATTATCTCGGACAAGAAAAAGAAGAAGCAGACGCCTGTCTCCAGCTCGGTGATATATTTCAGGAATTAAAGCAATACGAGAAAGCCATGGAATGTTACCACGATACTATGAATCTCAGCAAAAGTTTTGAAGATCAAAATATGCAACTAGTTGTAACACGAAGATTAAGAAAATTATACCTGACATTAGCGTCAGATCATTCTAAAGATTGTGATTCTGACAAGGCGATGGAATGGTACCAGAAAGCGTTGGATATTTCAGGCACTGAACCCAGTCATCTTGCAGATACTGAAGCAGTCCAAACATTCAGAGAAATTGAAACGGGGATTTCAAAATCTTGGACATGGGAAGAGAAATcgataattcataaagaaaagttCATAAAGTTGCATGAATGTGGACGAGTTCATCCGGAAAAAGTCAAAGATATCTGCAATGTCCGTGTTTGTTTCTCGAGCGAATTTCTAATTGGCAGAGGAAGCGATGCGACGAGAGTTTATATAGGTCTAGGTAAAGATGGTTACGAGAGAGCCGTGAAACGATTACCCAGAGATGACTGTGCTTGTTTAGCTAAACAAGAAAAGAAGATTTTGAATGAACCCAACGCTGTTGCATCAAATCATGTGGTCAGGTACAGGTTTCTAGACGACGAAAGCGACCATGACTGGGTATTTCTAATCATGGACTTGTGCGAAGAAACGTTGAAAGAATATGTTCAGCGCAGTAGTTTTAAAGATTTGTCAAAAATGGCAAAAGATATCATTCAACAAGTCTTAAAAGGATTAGCAGACCTGCACTGTGAGCCAAAGCGCATTTTACATCGTGATTTAAAACCCTCGAATATATTGCGAGATATTGACGACAAATGGTTGCTTGCAGACTTTGGTATCAGTCGAATCTTAACGCAAGACGCAAGTACCTGCAAAAGCATGGAGAAAGGTACCAAAGGGTGGAGAGCTGTTGAATCGTGCTCCTCTAAAGAACCATCCAACGATGCTGAAGTACGTTACAAGAAAAAATCAGATATTCAGGTGGCGGGAATGGTGGCATTCTACACCGCAACGAAAGGCGAACATCCGTTTGGAGAAGAACGATATCGACTTGACAACCTACTTAATGGTAATCCAGTTGGCTTGGATACTGTGGAAGATCCTGTCTTGAAGGATTTGTTGTCCTGGATGTTGAGTCACGATCCCAAAGATAGGCCGTCAGCTAAAGAAGCCCTGAAACATCCTTATCTTCAGCCTGCGAAACAGCAGTTTGAAATGCTATGCAAGATGGGAAACCAACAAGAGATTAAGTCTGGAGATAAAAGTTCGAGTGTCGTGCAAGCGTTGAATGGTGATCCTATAGATTGGAGAACTTTGATAAGACCCGATGTTCTAAACTATTTGTGTACTGACTTTTCGAATGGCAAATCAAAAACGTTTCGTTACGGCTCGTCCTGGACGGAGTGTTTACGACTGATCCGAAATATTAACCAACATTGGCATGACCGACCCCGTCCATTACCACAACCCGAAGCATATTATATTGTAAGCGATCCACAAGAATATTTCCTGAGTATCTTTTCCAGTCTTCCGGTGGTGGTGCACAGAATTGTTCGGTCATGTGATTGGAAAGAACGACTTGACCTCAAGGACTACTTTGCTTAA

Transcript

BRAKERXEIT00000025098

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZCI1	Mitogen-activated protein kinase 10 OS=Oryza sativa subsp. japonica OX=39947 GN=MPK10 PE=2 SV=2
Q5SN53	Mitogen-activated protein kinase 8 OS=Oryza sativa subsp. japonica OX=39947 GN=MPK8 PE=2 SV=2
Q6L5D4	Mitogen-activated protein kinase 9 OS=Oryza sativa subsp. japonica OX=39947 GN=MPK9 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000829 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06479 all species →	Ribonuc_2-5A	Ribonuclease 2-5A	Family	Interproscan
PF13176 all species →	TPR_7	Tetratricopeptide repeat	Repeat	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038357 all species →	Homologous_superfamily	KEN domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR010513 all species →	Domain	KEN domain	Interproscan
IPR051476 all species →	Family	Bacterial Response Regulator Aspartate Phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46630 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 29	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan
GO:0006397 all species →	Biological Process	mRNA processing	Interproscan
GO:0003341 all species →	Biological Process	cilium movement	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERXEIP00000025098.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.