Genomic Location: chr13:8364818...8367891
NR annotation: CAB4019957.1, peroxisomal NADH pyrophosphatase NUDT12 [Paramuricea clavata]
Species Muricea muricata · all data for this species · gene families
| CDS |
| BRAKERXEIT00000026508 |
| Transcript |
| BRAKERXEIT00000026508 |
| Protein |
| BRAKERXEIP00000026508.1 |
| UniProt accession | Description |
|---|---|
| Q4R7L8 | NAD-capped RNA hydrolase NUDT12 OS=Macaca fascicularis OX=9541 GN=NUDT12 PE=2 SV=1 |
| Q9BQG2 | NAD-capped RNA hydrolase NUDT12 OS=Homo sapiens OX=9606 GN=NUDT12 PE=1 SV=1 |
| Q9DCN1 | NAD-capped RNA hydrolase NUDT12 OS=Mus musculus OX=10090 GN=Nudt12 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0011295 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00293 all species → | NUDIX | NUDIX domain | Domain | Interproscan |
| PF09296 all species → | NUDIX-like | NADH pyrophosphatase-like rudimentary NUDIX domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002110 all species → | Repeat | Ankyrin repeat | Interproscan |
| IPR000086 all species → | Domain | NUDIX hydrolase domain | Interproscan |
| IPR049734 all species → | Domain | NADH pyrophosphatase-like, Nudix hydrolase C-terminal domain | Interproscan |
| IPR015375 all species → | Domain | NADH pyrophosphatase-like, N-terminal | Interproscan |
| IPR036770 all species → | Homologous_superfamily | Ankyrin repeat-containing domain superfamily | Interproscan |
| IPR050241 all species → | Family | NAD-capped RNA hydrolase NudC subfamily | Interproscan |
| IPR015797 all species → | Homologous_superfamily | NUDIX hydrolase-like domain superfamily | Interproscan |
| IPR020084 all species → | Conserved_site | NUDIX hydrolase, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR42904 all species → | NUDIX HYDROLASE, NUDC SUBFAMILY | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0016787 all species → | Molecular Function | hydrolase activity | Interproscan |
| GO:0005777 all species → | Cellular Component | peroxisome | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006734 all species → | Biological Process | NADH metabolic process | Interproscan |
| GO:0006742 all species → | Biological Process | NADP catabolic process | Interproscan |
| GO:0019677 all species → | Biological Process | NAD catabolic process | Interproscan |
| GO:0035529 all species → | Molecular Function | NADH pyrophosphatase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03426 | NUDT12_13, nudC; NAD+ diphosphatase | EC:3.6.1.22 | Peroxisome | ko04146 | deepkoala |
Genes whose expression across the transcriptome samples of Muricea muricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Muricea muricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
