Gene detail

Detailed information of BRAKERXEIP00000027899.1 in Muricea muricata

Genomic Location: :...
NR annotation: XP_028400290.1, uncharacterized protein LOC114523531 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERXEIT00000027899

ATGGCGACTTGCTGCGAAGCCGAAAGCGATGGGATTTCGGAGGAAATCGAGTTACTTGAGGCGATATACGTCAGCGAACTTGAGGTTCATGGTCCTCAAGAAAGGCCCACCTTGGTCAATTTATTTCTTCACCCAAGTACTGGTGATGATGACCATGACAGTAAATATGTCTGTGTAAATCTCTTTCTCTCTATCCCTGAGGACTATCCACTTATTCCCCCTGGTATATCCATTAAAAACCCTAGAGGTCTTTCCGATGCTCACATTACAAGCATTCGAGACAACCTCATTGCTCTTGCAAAGGAAAAAATTGGATCTCCTGTGCTGTATGATTTGATAGAGTACACAAAGGAATGCTTGTCAGACAATAATATCCCAAGCTGCCCTTGTGTCATCTGCTTGGAGCATTTTGGGAAAGAAGAGAAGTTTGTAAAGACTGAATGTTATCACTATTTTCATTCTGCATGTCTTTCAAATTATGTTGATCATTTCTTGAGTGAAAATAAAGATAAAACGCTTGTGTGCCCAATGTGCAGACTTGAAGTAACGTATGACAAAAGTGAATACACCGCTGAGGAGAACGACATTTCCAGTGAGAGCATGTTTATTTATAAGCCTGATGCTGAGCAGCTAAAAGCCCAGGCTAAGAGGCAGAGAATATTTGAACATCAAAAACGTAAAGGGGGAattataaatattgaaaaagaaaagaataaATATCTCATTGAGATTAAGGATAAAAAGGGCGAAGATACTGAAAGCAATGACTTGGAATGCGACATAACACCGATACCTGTCGTGGAGGAAACGTCTGGCACCACTAAATTGGTTTTGACCGCTGAAGGTCACAGTGATAAAAATGTGGCACGCGATCAAATGGCCAAAGGTCGAAATGACGGAAACCTCAAAGAAGTGAAGCATAATGAAGGTCAAAAGAGGATAAAGGTGACCGACACGGGTAATGTTCGGATAAACGCTGATCAAGCTAAGCGTGCTGCAATTCCTGGCTCGAAAGACATTGCTGATTGTGGGGGTATCGATACTGGTAGAGAGGAGAAAAAAGACCAAGATGAGCTCAGCAAGACCGGGGGATATCGGAAACGAAAGCCACGATCATCGGCAGAAAATCGAGACGAAAGCAGGAGTCAACATAAGGAATACAACAAGCCTTCAAATGGGAGAAAGAAATCCGATGCGCGAAGATTTCTAAGAAATTCTCCTTCACCGAATGATGACTGTGGGAGAAGGCCAGAAGAAAGCAAACAAATTAAGGAGCGAGTCACAGCGAAAAACAGTCGGCCTAGAAACCATGAAATGCAGAGAAACGAGAGAAATGTCAATTCAGGAAAGAAAGACGGAGATCTTGAGGGGAGATTTCAACTGGATGTCAAAGCACAAGCTAAGCAGGGTGAAGGGCAAGATATTCATTTGAAAGGCCAGGCAAATACGGTGGATGCCGAGAAGGAAGGGATAAAAAACTGTCGGAGTAATGAGGCGATGTCATCTGCTGTCTTATCGACACCTTCTACAGAGGCTAGGAAACCAAAGGAATATGGAAGCAATGTTCAAAATACGAGTGATGAAAATAATCCGAGCCAAGTAGAAAACAAGCAATCTTCGCGAATCAGAAAAGACTATCAGAGAAAGTCAAGAGGGGCAAGGACCTCAAGGAGACCTCAGGAAGGCAATAAGCTTTTAGAAGAAAAAAATTCGCAGAAATCACACGGTTCTGGCGCCTCGGTCACTGGGCAGACACAAGGAACTAAGAGTAGGGGTGAAACTGCGAAGAGAAACGATTTACCTATTTCAGACAAAAATCAATCTGCGATGAAAAGCGGCAAGAAGTTTCCACGAAAATCGGAAAGAACTTCCTCAAATGTTGGCGATACTAATAATTGTAAAAGCGAACAACCAAAACGGACACCTGCTTCCGGATTTGAAAATGTTAGGCCTCCTGATGGGACGGACGAACAGAAAGTTGCGTCAAGAGGATCGGGTCAAAAAGGGAGCGGTCTAAATGCTACTGGTGTGAAGTCGTCCACACGACCTCCACCTAGATTTGAAAATGTTAAACCTAGTAGAAAAATGTAA

Transcript

BRAKERXEIT00000027899

Protein

Uniprot

Gene family

Uniprot term	Description
Q96BH1	E3 ubiquitin-protein ligase RNF25 OS=Homo sapiens OX=9606 GN=RNF25 PE=1 SV=1
Q5E9N3	E3 ubiquitin-protein ligase RNF25 OS=Bos taurus OX=9913 GN=RNF25 PE=2 SV=1
Q9QZR0	E3 ubiquitin-protein ligase RNF25 OS=Mus musculus OX=10090 GN=Rnf25 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING
Ubiquitin Family	E3\|E3 activity\|RBR

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639	zf-RING_2	Ring finger domain	Domain	Interproscan
PF05773	RWD	RWD domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR006575	Domain	RWD domain	Interproscan
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR039133	Family	E3 ubiquitin-protein ligase RNF25	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13198	RING FINGER PROTEIN 25	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0051092	Biological Process	positive regulation of NF-kappaB transcription factor activity	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10640	RNF25, AO7; E3 ubiquitin-protein ligase RNF25	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala