Gene detail

Detailed information of BRAKERXEIP00000028985.1 in Muricea muricata

Genomic Location: :...
NR annotation: CAB4027838.1, receptor-type tyrosine- phosphatase T [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERXEIT00000028985

ATGACGAGTTTATCAAATCCAGGAAGAAGTGCTGATCTTTTCCTTAAAAGTggtaaatattgcaaaaaagaCCTTGTAACTTACCGACCAAAAGTAACGGGCGACAAGATCAACAACGAAAAGAAGGTCGAAGTTGGAAATTTGGCGTACTTTTACAACCGCAGTCCCTATATCTTATGCATAGGAAGCAAATCAGTCAAAGATGGAGAATGGGAACCAAGGGAAAATGAGAGAGTTTCTGTCGAAGGGAAAGTTTGCGAAGTTGATAACTCTTGTAAATTAGACTACGTGTATGAAAGAAAGTTTTCCGTTGGAGTCGATGCAAAATTCCAGTGTGAGTCATGTTCATCAGGAATCGAAGTTATCTGGGCAGATTACGGAGTGGAGTTCATACAAAAATATCCATTTCAAATTAAAAAGGATGATCCAAGCTGTCGGAGTACCAATCCGACCAGTGTCGTGGAAAACAAGTGCAATAATAGAAAAAGTTGTTCTTTTAGCGTCAGTGATGCTGCCTTCTTCTCATCGAGATCAAATTGTGGCAGTAAAAAGATCTTACTCGTTCGTTACAAATGCAAAATGAACATTCCAGCTGCCCCAAGCTCGCTAAATATCAAAGTTACAAGCCAAAATGAACTAACAGCGATTTGGTCGAACGGTGACAACAGAGGTCTTAAAAATAAGTTCCAGCTTTGTAGGAACAAGGATGGAGAAGCGGTATACTATTGTGATATTGTAACTTCTTCTGAACCTAGGATAAGCAGACCTATTTTCGGCCTGCAGGCGGCGACAAAGTACATCATAAGTGTAGCACGATACGCTAAAGATGAAAAAACTCTTGGTAGAAAAAGTCAGGATGTTGCCATAACTCGCTCAGgcCCACTACAAGCTGCTGGAAAAAAATCTCTAAACTCGTTCCAAATTAAACTTAAGAAACTTCAAAGCGATGATATATATGTTCAAATTGTTGTATCAAAACttgaaaacaacaaaaaaccAAGTCTCTATCCAGGAAATGATCTTCAACCGTACGATGGCACAAACCCAACCTACATCGCCGCAGAGCTTAATAAAACCTTCATGAATGAAAACAGTTTTTTTACTGTTGGAGATGGTAAAAAATACGGACGATCTAGttcaagaaaaagaagaaatatCGAGTTTAAGAATGTGGAATTGACGCCAGGGGCGCATTACTCTGTTTTGCAAAGGACATTCAAAACTGCGGAATTATACTATGACACAGATTGGATGAATGTTACCCAAACAGATAAAACTGATCAAACTGGCATGCGCTCGACCACACCCATGTCCTCAAACACTCTTTTAAATAGTGATGGTAATGCAGGCAGTGATGAGAGAAATGATAACTCTGGTAACGGAACTAACACAGCGATAATTGGCGCAGGTGCTGGTGGGGGAGTGTTGCTGATTATTTTAGTAATATTCGTCATCATTTTTATCAGGCGAAGGCGTCGAGACAACAACAACAGTGACACTcatatttattcaaaaccggtgaaatacaagaaaaataagAACATGAAAACAGAGAGTGACAATGAAGAAACTGGTTATCAAAATCATCCTGCCTCCGTTGATCTCGTCGAAGAAAATCCCAACGTCTTTACGGCTCCTTCTGGCGACGTGTATGCGAAACCTATAAAGAAGAAACCCAACCAAGACACTGAAAATCAAAACGGGATAAACAATGATACTTATGCGAATATGAAAGATGAAGTTCCTGAAGACGAAGAGAAGGGGGTGCAAATATCACGTTTCCTGATGTACGTGGAAGAGATGAAAAAGAATAGTAACTACGGATTTCAAAAGGAGTTCGACGAGTTCCCAGCTGGACAAACTCAGCCATGGGATGTGGGAAGGAGCgcaaaaaataaacagaagaaTAAGTACAACAATAATGCAGCGTATGATCATTCCCGCGTCGTGCTGCCTGGAGAAGACGACTACATCAACGCTAACTTTGTAAAGGGCGTAGAATCAGAAATTTATATAGCTGCCCAAGGTCCACTTGAGGAAACGGTGGACGATTTTTGGCGAATGATCTGGGAGCACAACTGCACTTGTATAATTGCTTTGACAAATATTGTTGAACTTGGCAAGGTGAAATGTTTCAAGTATTGGCCTGACATTGAGACTTCATTTGGTGAAATTCACGTGAAGACAGTAAAGACTGGGTTATTCGCTGATTATGCAATACGATATCTTGACATAAAGAAGAATGGACGGGGTAAAAAGATCACGCAGTATCATTTCACATCCTGGCCTGATCATGGTGTACCTAAATATCCCACTAAGCTCCTGGCATTCCGTCATCGCTTTAGAGCTTTGCATTCAGTGAGTTCTCAACCAATTGTCATACACTGCAGTGCTGGGGTTGGCAGGACAGGAACATTTATTGCTCTGGATATGACACTGCTGCGTCTTAATCAACTAAATGAACAGACCGTCGATATTCGCGATGCTGTGAGTGAACTAAGAAAACAGCGAGTAAACATGGTCCAAACAGTGGAACAATACACACTCGTACACGATGCTGTGCTTGAGACCATTCTCTGTGGCTTTACTGAAATCGTGGCGGAAAATTTGAGCGTAGAAGTCGAAAGGCTTGAACAAAAAGAGCGGGATAAATCTTTTACCGGATTTGAGATTGAGTACAAAAAATTAGACTCGATGCGTCATCCACTGGTGCCAGACGAGTGTATGGCTGCTCTGCTGACAAAGAATAAATCAAAAAATCGTGATGTGAATATTTATCCATCTGAAAACTTGAGAGTTTATCTTTGTGGAACGAAGGAAGAAGAAGATCCATACATCAATGCCACTTATGTCCACAGTTATACTCAAACACGGGCCTATATCGCTACACAAGCACCACTTCCACACACCATCAACGATTTCTGGCAAATGGTTTTTGAAAAGAAGACTGTTGTTGTTGTAATGTTGAATAACCTCACCGAAGGGGAAACGATTTTCCCTCAATACTGGCCGGAGGAATTTAACGAAGAACAAGAATATGGTGACCTGTTTGTCAAGATGGTGTCCGCGGAAACTCGAAAACCAATCGTTTCTAGGAAATTTGTCATCACCAGTAAAAACAAGAAAGCTGCAGTCGCTGAGCACGTGGTCCGACACGTGCAGTTCACTGATTGGCCAGAACACGGTGTTCCTGAAAaccataatgacgtcatggaTTTGTTGGACAGCGTAGAAGAGGCTCAGCAACGTTCAGCCAATGGGGCAGTAGTCGTGCACTGTAGTAACGGCGCACATAGGACTGGTGCCTATTTAACATTGGCTATCCAGCGCGAACGCGTCAGTACCGagcacgtgatcgatatctttaGATGCGTGAGAATGTTAAGAGAACAACGTCCACAGTTTGTTGGTAATCTGGAGCAATATAAGTTCTGTTACTACGCTTTGTTGGACTTTGTGGAGTCGTTCAAAAATTATGACAATATCCCCAAAGTACAGAAAGAGTGA

Transcript

BRAKERXEIT00000028985

Protein

Uniprot

Uniprot term	Description
F1NWE3	Receptor-type tyrosine-protein phosphatase S OS=Gallus gallus OX=9031 GN=PTPRS PE=1 SV=3
Q64487	Receptor-type tyrosine-protein phosphatase delta OS=Mus musculus OX=10090 GN=Ptprd PE=1 SV=3
Q99M80	Receptor-type tyrosine-protein phosphatase T OS=Mus musculus OX=10090 GN=Ptprt PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02140	Gal_Lectin	Galactose binding lectin domain	Domain	Interproscan
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000922	Domain	D-galactoside/L-rhamnose binding SUEL lectin domain	Interproscan
IPR050348	Family	Protein-Tyrosine Phosphatase	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR043159	Homologous_superfamily	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19134	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0030246	Molecular Function	carbohydrate binding	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan