Genomic Location: chr15:9536015...9539589
NR annotation: CAB3996827.1, microtubule-associated RP EB family member 3-like isoform X1 [Paramuricea clavata]
Species Muricea muricata · all data for this species · gene families
| CDS |
| BRAKERXEIT00000028995 |
| Transcript |
| BRAKERXEIT00000028995 |
| Protein |
| BRAKERXEIP00000028995.1 |
| UniProt accession | Description |
|---|---|
| Q66HR2 | Microtubule-associated protein RP/EB family member 1 OS=Rattus norvegicus OX=10116 GN=Mapre1 PE=1 SV=3 |
| Q61166 | Microtubule-associated protein RP/EB family member 1 OS=Mus musculus OX=10090 GN=Mapre1 PE=1 SV=3 |
| Q3ZBD9 | Microtubule-associated protein RP/EB family member 1 OS=Bos taurus OX=9913 GN=MAPRE1 PE=2 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006693 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03271 all species → | EB1 | EB1-like C-terminal motif | Family | Interproscan |
| PF00307 all species → | CH | Calponin homology (CH) domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001715 all species → | Domain | Calponin homology domain | Interproscan |
| IPR027328 all species → | Family | Microtubule-associated protein RP/EB | Interproscan |
| IPR036133 all species → | Homologous_superfamily | EB1, C-terminal domain superfamily | Interproscan |
| IPR004953 all species → | Domain | EB1, C-terminal | Interproscan |
| IPR036872 all species → | Homologous_superfamily | CH domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10623 all species → | MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005815 all species → | Cellular Component | microtubule organizing center | Interproscan |
| GO:0005881 all species → | Cellular Component | cytoplasmic microtubule | Interproscan |
| GO:0008017 all species → | Molecular Function | microtubule binding | Interproscan |
| GO:0031110 all species → | Biological Process | regulation of microtubule polymerization or depolymerization | Interproscan |
| GO:0035371 all species → | Cellular Component | microtubule plus-end | Interproscan |
| GO:0035372 all species → | Biological Process | protein localization to microtubule | Interproscan |
| GO:0051010 all species → | Molecular Function | microtubule plus-end binding | Interproscan |
| GO:0051225 all species → | Biological Process | spindle assembly | Interproscan |
| GO:0051233 all species → | Cellular Component | spindle midzone | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10436 | MAPRE; microtubule-associated protein, RP/EB family | - | Cytoskeleton proteins | ko04812 | deepkoala |
Genes whose expression across the transcriptome samples of Muricea muricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Muricea muricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
