Gene detail

Detailed information of BRAKERXEIP00000029213.1 in Muricea muricata

Genomic Location: :...
NR annotation: CAB4003308.1, Nuclear pore complex Nup153 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERXEIT00000029213

ATGGTGGACCAGCCGAACCACAAATCCTACAAAATTCGCGGTCATAGTCGGCAACGGAGAAGCTCGAAACCATATTACAGACCAAGCGAAGCGAAAAATAAGGGTTTACTTGATAAAGTTAAGGACTATTTGAGCCCTTCGTGGTTGTTTGGATATTTTACGTCTAAGGAAGACGAGTATGTGTCTTCTGACGTCGAGGAGGATGCCTCAAATGAACACGCCACAGTGACACACGAAGAAGGGAGTACTTCTAGTTCTTATGTTCCAAATCAAGGTCGTTTAGACAGCGTTGAAGAAGAGAGTGATGGCGATGCTTTCGAAAGTTCTGAAAAGGACAATGATAGAACTATATCAGATGATAGAACTGATAAACAGGCACAGGTATTTGATGAAAATACTACAAGGCCAGAGAGAGTGGCAAATCCAGACTTGTCTGTCAGATTGTCAGGATCGCTTGACGATGACATTGAAgATGAAAACGAAATACGAGCAACATTGCAGTCAGACAAGCCACAGCAGTCTGTGTTGTCGTACGCGACAGACCAGCTCACACGGAAGCCTTTGCCGTCGTTGCTTAGTTCTCGTCCAATGTCCAGCTCGTTGCTACTACAACGAGGAACGCCCAGTGCTCGTTCCAAAAGAAAGCCTTTACTGGGGTCGTTGTCGGCTCGAAGTACCGGTAGTACATATACTCCAAGTGTTAAATTCTCGACTCCAATGACATCAAGTGGTGTTGGCTTTTCAAGTACACAAAAACAAAGTTCAAGTGAAACTAGACCTAGCATTTTATCAATGAGGAGTTCGTCTCTGAGAGACAGTAATGTTACCAGTAGCCAAAGATCTTCGGTCGATGCTACTCCAAGATTTAGTAGTACCTCAACGAAGACAACGACGTCTGAACCAATTCCTCCAACTAACTCTGGTCCATTATTCTCTGTGGAAAAATTTGTCACACCTGTGCAAAGAACATTTACCAACAAAAGAGTGGGATCACCAAATTATCCCGGGCCTGTGATGTATGGAGGAGCTATGACTGTTTCTCGTGATGTGCCCTTCAAGCGAAGAAGAACAACTTCCCCTGGCTCTGAGAGTTACCATCCTGTTTCGAAACTTCGCATTCGAGGAGTGAAAGAAAAAACGATTCAAAACTTAACCCATGGGGGAAGTGGGACAAGAACTGCCCAAAGAATCCTCGATGCTTTGGAGTCTGTTTCATCTCCACTTAAAGATGTTCATCGAATACCATCGCCAATATCACTGGCTTCAGCCTCACCACTGGCATTTAAGCCATCAAAGTTCCGAACAACCCCACCAAAAACGAAAGTTGGTCCGCGCGTTTCGTATTTGCAGGCGAAACTGTTGGGGGATCCTCCTGTGTCGTCATTACAAACTCCCGGTGTCGCCCGAGTTTCCTTTCTTGAGGATGCTACGTCTACAGAAGGCGGGCCTAGTTCCCCGCCTTCATCCCCGCCAAGAAAGACGTCTAAGAACCCTGCTCAAGACCATTCCTTtttcaGCGGTTTGAAAGACACCGTTTTAAAGAGTTCCCTTCCAACAACGTTTGCGCCAAGGTCTTTGCCCACATCGCTTTCGCCGATTGAAAACTCCGGGAAAACATCCGGAAAGATGAAGACGGCGAGCCGTACTGCACCCATGCATTATTGCCACCAAAAAACTGACCAGGACGGCGAGGTCGTCAATCCGTTACCCGAAATCCGCAGTGCCGTGCCGCTTTCTCTCAATGCGGGGAAGACGATGTCTTTGCCCATGTTCAGTGCAAACAAAGCGAACGATGACTCCAAACTAGAAGAGAACAATCTTAACAAACAGGAAACTTCAACGAAAGACAAGCTGTTAAAAGAGTCGCCTAGAAACGGTTTTATCTTTTCAACGCCAGCTCCAAAAACTCAACGTTTCTCAGAAAGGGAGGACTCAGATGCCGCTGCTGATAAGGTTTCATTTTCGTTCAGTGATCCTCTACCAATGAAGAAGACTTCTGATGCAGGTAAAGAAACATTTACGAACCCTCTCTTGCAATCTCAGGGTTCTCCAAACAGTTTCCAACCAACGATCAACGTTTCGGTAAAAGAAAGTGGGAAAAATAATTCATCTTCAAAGAGTCCTTTGACGAACGATATATCTTTTGGTTCAAACAAGACACCACCCGCTGAGAATCTCGGGAAATCTGAGcccacacaaactaacgatttCGCTCAGCGGTTTGCACCGGTTGCAGGTTCATGGGAATGTACTTCAAGTATGCTGAGCAATAAGGCAACCGCGACAAAATGCGTTGCTTGTGAAACGGCAAAACCTTCTGTGGGTAAAACCGGTTCGGACAAACAGGAAATAGACTTGAAAGCAAAGTTTGCTGCGCCCAAAGATTCATGGGAATGCGCGATGTGTATGATTAGGAATAAAAACGAGTTGACCAAATGTGCCGCGTGTGAGACAATTAGGCCTGGGATTAGTCAAAATGACAATTTGAAACTCAAGTTTGCTGCTCCCAGTGGTTCATGGGATTGTGCGACTTGTATGATACAGAATAAGGCCGCTGACCTTAAGTGCGTTGCGTGCCAGACGAGTAAGCCTGGGTCTAGTTCTAATGATAGTTTGAAACTAAAGTTCGCGGCGCCCAGTGGCTCATGGGAATGCCCGACGTGTATGATACAAAATAAATCCGGGGATATGAAGTGTGTCGCGTGCCAGTCGAGCAAGCCTGGAGCCGAAAGTTCAGGACAAAACCAAACTGGTTTCACCTTCGGCACAACAAATACAACTTCAAGTGGCTTTACCTTTGGCGGGAACGGCGCTTCAAAATCGAGCACAACCTCTGGGTTTACTTTTGGCAATAGCGACAGCAAGGACGCTACTGATGCGCCAAAACCGTCAGCGTTCACCTTCGGACAGAGTTCCTCTGAGGCTAAGAAGACGAATTTTAGTTTTGAAAACAGCACGGCAGCCGCGACAACAGCGAGCAGTGATGCAAAGCCAGCTTCTGGATTTACTTTCGGCGGAGGTGCAGGCGAGACGGCTGCTGCTGTCCCGGCGTTTACTTTTGGGGGCGGTTCAAGCAAAGAGGAAAATAGACCTCAGTTTTCGTTCGGCGCTGGAAAAACGGAAAGCACGCCAAGTCAAAGCGTACAGACAGTTAGTGATAACAAGAAACCCAGCGAAGAGCTCTCAACTGCGCCCACAATGAACATCGCCCAAGCTGCTGCAGCGGGACTTTTGAAAGTTCCCGGAAAAGAAACGCCGACTCAAATTCCGGCTCAACCATCGGTCAACGTCCCAGCTCAACCATCGGCTAAAGTCCCAGCTCAGCCACTGGCCCAAACTGCCACAAATCCCACTGTTCCAACATTTGCATTTGGTGCGACAGCCACGTCCACTGTCCCGGCGGAGCAAAAGACCGGGACACCAAGTGCAGCGTTTACTGCGATCCCTTCGACAACCGCCCAGGTGAAACCGTTCGCTTTCCAGGGATCAACAACATCTGCAGTGGCTAGCACAACTGGAGGCTTGTTTACCTTTGGAGCTCAACAGTCAAGCGCAGTCTCCGCGGCGAGCTCATCTGCTGCGAAGCCTAACTCGACCAGCTTGTTTTCATTCACCGGCTCTACGCCCGGGAACACGGTCACATCATCATCTGGCAGCGCAAACACCCCATCGTTCTCGTTCACACCTTCAAACACCGCTACACCTTTGCCAGGGGCTGCCACCACAGCTGCAACGCTTCCTACAACTAGCTCCGCTCCTTTGTTTAACTTTACTGGATCTGCTGGTCCTTCTGTCAAAACGACGCTCCCGTCAAGTGAAAGTAGCCAGCCATCCTTATTTAATTTCTCtgggtcgacaacaacagcccaAGCCAAACCGCCCGCAGTCTTCAACTTTGGTGGTGCAGTGAATGGCCCTACATCAAGTAACGGACCAAGTGTCACCGCTGAGCAGACTGGAAACACTCTGTTTTCTTTCACTGGAACTCAGCAGTCGTCTACGGCCCCTGTTGTTGAAAATCAAAATTCAATGGGGGGTGAAGATATGGATGCAGATTCGAACAATAATCACGATCAAACCACTTTCCCTCAGGCAACCGGCGGCTTCAACTTCGCTGCCCAGGCAACAGGAAATACAACGGGTATATTTTCTGGAGGGACCAACGCTACACCTGGCAGCACTCCAGGGGGGTTTAATTTTGCTCCCAATGCTGGCGTAGCACCGACATTTCAGTTTGGAAGCAATCAGAACACGCCTTCTGGTGGCTTTAACTTCGGGGCACCTACCGCTGGCTCGTCTCCTTTTATATTTGGCGGCGCGTCAACTCCCGCAGGCGGAACATCAAGCCCGTCGGTGGCTCCAGCTCCAACGTTCAATTTTGGGGGATCCTCAGTAGGATCCAAACGAGGTGTTAACGTCGCTGGACCAACCAACGACCAGCCAAGCATGTTCAATATAGGCGCAGGCCAGACAAGCACGCCATCCAACCGAGTCTATCGTAAAGCAGTGAGACGTAAGCGATAA

Transcript

BRAKERXEIT00000029213

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|ZnF\|NZF

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00641	zf-RanBP	Zn-finger in Ran binding protein and others	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001876	Domain	Zinc finger, RanBP2-type	Interproscan
IPR036443	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR026054	Family	Nuclear pore complex protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23193	NUCLEAR PORE COMPLEX PROTEIN NUP	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006405	Biological Process	RNA export from nucleus	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0008139	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14296	NUP153; nuclear pore complex protein Nup153	-	Messenger RNA biogenesis	ko03019	deepkoala