Gene detail

Detailed information of BRAKERXEIP00000029761.1 in Muricea muricata

Genomic Location: :...
NR annotation: XP_028408553.1, cleavage and polyadenylation specificity factor subunit 3-like isoform X2 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
P79101	Cleavage and polyadenylation specificity factor subunit 3 OS=Bos taurus OX=9913 GN=CPSF3 PE=1 SV=1
Q9UKF6	Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens OX=9606 GN=CPSF3 PE=1 SV=1
Q9QXK7	Cleavage and polyadenylation specificity factor subunit 3 OS=Mus musculus OX=10090 GN=Cpsf3 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|U-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11718	CPSF73-100_C	Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term	Domain	Interproscan
PF07521	RMMBL	Zn-dependent metallo-hydrolase RNA specificity domain	Motif	Interproscan
PF10996	Beta-Casp	Beta-Casp domain	Domain	Interproscan
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan
PF13923	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021718	Domain	Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term	Interproscan
IPR011108	Domain	Zn-dependent metallo-hydrolase, RNA specificity domain	Interproscan
IPR022712	Domain	Beta-Casp domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR050698	Family	RNA Processing Metallo-Beta-Lactamase Domain-Containing Protein	Interproscan
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR036866	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11203	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004521	Molecular Function	RNA endonuclease activity	Interproscan
GO:0004534	Molecular Function	5'-3' RNA exonuclease activity	Interproscan
GO:0005847	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan
GO:0006378	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0006398	Biological Process	mRNA 3'-end processing by stem-loop binding and cleavage	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan