Gene detail

Detailed information of BRAKERXEIP00000029928.1 in Muricea muricata

Genomic Location: not available for this species
NR annotation: CAB3996865.1, inhibitor of nuclear factor kappa-B kinase subunit alpha-like, partial [Paramuricea clavata]
Species Muricea muricata · all data for this species · gene families

Sequence

CDS

BRAKERXEIT00000029928

ATGGCCGAAAGACGTAAAATTGGGAATTGGATTGAGAGTAATTGTCTTGGCAGTGGGACGTTTGGCATGGTCAAACTCTGGTGCAATGAGATAACCAAGGAGAAAATTGCTCTAAAAGTTTGCCATAATGATCCACCAATGAAGCCGAAAGGTCGCGAACGCTGGAAGCAGGAAGTGGAATTCCTGAAAAGAATCAAGCATCCCAACATTATTGAAACACGACCATTGCCAAAGGAATTGGTCGAAGAAGGATGCAAGGAATCTCTTCCTGCCTTGTGTATGGAATATTGCGAGGGTGGAGATTTACGTAAGACGTTAAGCATTGCTGAAAATTGCTGTGGCCTAAAAGAAACAATGATCACAAGAGTTTGCGAAGATATTGCAAATGCTATTGAATGCCTGCACGGAGAAAAGATTGCGCATCGAGATCTCAAGCCTGAAAATATCGTCATTTGCTCAAGACAAAATAAGAATATTTATAAAGTGATTGACCTGGGTTATGCAAAAGAAGCTGATAAATCAGGCCTGTGTTACTCTCTTGTTGGAACGAATTTTTATCTGgCTCCCGAAATTCTTAAAGGCGAACAGTACACAATAAAAGTTGATCTTTGGAGCTACGGAATATTGTTGTACGAATGTTGCACGGGCGTTCGACCGTTTCCCGCGCGATGCAAAGAACTTTTTCAAAGTACGGACAGCAAAGATGAGAAGTTTATCGCGGTCACTGTGGAACCCGAGAATGATATGTTGTTGTATACAGATAAACTACCCAAAGTAAACAGGCTAAACTGTGTTCTGCAGGAAAAATTTGAAGAGTTGCTCCGTTTGTTGCTGGATAAAAACCCCGAACGACGAGGCTTTCGTCAAACCGAGAGCGGGACAAGATCATGGAGGGATTGTGTCACGGATATTCAAAATACTAAGGTCATTGAAGTGTTCTGTGTTGATTTGTGTAAACAGTTCGTGTACGAACTTACTGCATATTTCAGCTTGCAAAAGTTaaaggaacttcttcaaaagGACACAGGAGTCCCGAGCGAGCATCAGGAATTATTCATTCACGACGGAAGTGATTTAACTTCATTGTATTCCACGAACGCGAACTTGATGGCGTTCATGTTCAACAGAGCATTTAACCTGGCAGCAGAATTAAGATACAAACCCGACCTCCCGGACAGTCTACAAAAATTGCTGGAGAATCTCGAAGGCTTTGCGAAACGACCTGTGAAGAGGCACATGGAGGCGTACAAACACAGCGTGTTCTTCATTCACAAACAAATAGCAAGCAGCAAATGCCTCATTCGTGGTTTGAAAGCTTTAGTAATCCGTTTGCTCAAATGGTCTCGCCAGGAATTTACTGTGAGAAGTGAAGACGTGTATAAGAAAGTTGCAGAACTCAAGTCAGTGGATTCATTCTTCACACAAAGTCTCGAAACTGACTTGAAGTACTGCAGCAGTAACAGCTCGGCGCTAAGAAATGGAGTTTACAGATGTTTGCCTGATTTTGAATCCTGGAGACGAGTAGAAAAGGACATGGATGTGGGGAAAATAATGAGGGAAGCTGATGAAATTTTAAACCGAAAAGCTAGACTTCAGAATAGAATAGCAGCCATTAAAAACCATGAACAAATCAACAAAACTCCTGAACGTGTAATGTACCAGCTAAATAAACGGGCTGCTGAAATACAATCAACATTTGAACAAATGAAACAAAGTTCAAGAACTCAAGTTGAAAGGAGTTCTTCGTGGAAAGAAAAGATTGGAATAGTGCGGGACACTATAAAAATGACCTTACATGAAATTGAGAGAAATAATGCAGAATTTTATGAATTTTTAAGAGAATTATTTATATTGAGAAAAGAGTTAGAAAATTTTATTCCACTCCTAAATGGTTTTGAAACGAAAACAGACGAGCTTAAGAGGAAAATTCAGGAATGGCAACATGAAAGGCAGGAAGAAATCTGGAAGTTACTCGCCAGCAGGAAAGAGAAAGAAGAAAAGACTGAAAAAGAGGAAGGTGCTAGCTCCCAGCAACAGAAGCGAGTCCGAAGGCGAAGACCCCCAGGTAAAGAACTTGTAAAACAAAGTCAAGCACATCTTTCAAGaCTTGAAGATACGCTAAAGAATGTGAACAGCAAACAAGAACTTTTTAAAAATCAGATTGAGATATGCAGATTTTGTTGGCATCGGATAAGAACAGACGAGAATGGACTTTGTCCGGCTTGTAGAAAGcTCTATACAGAGGACCCAGCGTCATACAAACCTCCTTCGCAGGACGAaattcaaagaattttaaaagcaaGAAAACAGAAAGAATGTCAGAAAAAACAGAAACCTTTCGAGAACAGAAGTCACTTGGCAAATGTCAGaGTTGTACAAAAGAGTCTTGTCTTTATTGTTGGGCTCTCAACACGTCTGGCAAATGCAGAGCTTCTATCCTCTCAAGAATACTTTGGGAAATTTGGGAAAATTCATAAAATTGCAATAAATTCAAGCACAAACTATGCTGGTCCACAGGGACCAAGCGCAAGTGCTTACATCACGTACCTAGATGAGGAGGATGCTTTCGAAGCAATCAGGGCGGTCAATGATATATTCTTGGATGGTCGGGCTTTGAAAGCGTCGCTTGGAACTACAAAATACTGTACATACTTTCTAAAGAATACAAATTGCCCAAAAACAGATTGTATGTATTTACATGCATTGGATAACGATGGGGCTAGCTTTACGAAAGACGAAATGCAAGCGGGCAAACATATTGAATACGAACAGATGTTATTAAAGAAATACGAAGAAAAAAGaaaaacctcaaaaGAAAATAATGACAGATGGCCGACAAATTCACAGGATATCTCGACAGAGCAAGATTGCAGACATAATCATGATGAGAatgacacaaaactTGTCAATGGAAACAGTCCTACTCCGCCAGGACACCAAGGGATACCCGAGAACCAGAGGGATACAGATGAACAATATGAGTCTTGGAATGATGAAATATTATCGACAATGTTAAGTCCTACGAGTCTAAGACCAATAGGAGCCGAGCACAGAGCGACCACGAGTGTAGGAGATTCATTCGCACCTTCATATAAAGTGCTAGATAACATAAAACCCATCGCACCAGACCTTCACGCAGGACTTGGCTTATCAAATTTACacattcaagatggcggattatCAACAGAGGACGATCTAGGTTTCGACCCGTGCAATGAGTCTCGCAAAGCTCTCCAGGATCTAATCCAAGAAGAAACGGTCAGTTATCCCGAACACAAACCTGTCAATGCCACACCACAGTTCACAAACCATACGACAATTCCTGGGGCACATAATCCGCTACCCGGAGCGCCTGCAAGCTGTGTACCTACCGTGGAAGAAATGGAATTTCTCCGAAACTGGAAAGCTGGTCTACAGGCACTTCTACCAAATATCAATATAAGTTTCTCAGACACGTTTTCTCCGCCGTCCTGGCACGCTGGCAATGCAAACGGTTCCAGTTCTCTGTCATACAACAGTCAAGTTGGTTTCAAGCCTTACATTGCCCCTAGCCCACAAACACAAGGAGATCGTATGGTACGGCCACCTCCTGGTTTTGAGTCACAGAATACATCGTTCCTCGCTGATCTAAGCTCAGTGCAAGGATTTGCTGTTTCACAGCATGGCGGTGTTGCTAGTCACCGGATGGGAAATAACAGTAAAGACACAAATAGGCTCATGGCAGACTTCCACGATGACGCCGTGCTAGGGGTGTACGGAAGAACTGAACCAGAAAACAACACAGATTCCATGCGATCACGATACCTCGCGAACCGGCCGCTACAGACTACAGATAAATTCTACTCTTCAAATTTCCCACCGCAAGGTAAACTAGGACACAACAGAAATGATGCTCGTAGGGAAATACCTCGTAGAACTTAA

Transcript

BRAKERXEIT00000029928

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95628	CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 SV=3
Q8BT14	CCR4-NOT transcription complex subunit 4 OS=Mus musculus OX=10090 GN=Cnot4 PE=1 SV=2
Q9QY78	Inhibitor of nuclear factor kappa-B kinase subunit beta OS=Rattus norvegicus OX=10116 GN=Ikbkb PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003643 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF18397 all species →	IKBKB_SDD	IQBAL scaffold dimerization domain	Domain	Interproscan
PF14570 all species →	zf-RING_4	RING/Ubox like zinc-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR034261 all species →	Domain	CNOT4, RNA recognition motif	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR041185 all species →	Domain	IKBKB, scaffold dimerization domain	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR051180 all species →	Family	Inhibitor of nuclear factor kappa-B kinase	Interproscan
IPR046375 all species →	Homologous_superfamily	IKBKB, scaffold dimerization domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR003954 all species →	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22969 all species →	IKB KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008384 all species →	Molecular Function	IkappaB kinase activity	Interproscan
GO:0008385 all species →	Cellular Component	IkappaB kinase complex	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0033209 all species →	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0051092 all species →	Biological Process	positive regulation of NF-kappaB transcription factor activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERXEIP00000029928.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.