Genomic Location: chr2:1920150...1928365
NR annotation: XP_028413039.1, translation initiation factor eIF-2B subunit gamma-like [Dendronephthya gigantea]
Species Muricea muricata · all data for this species · gene families
| CDS |
| BRAKERXEIT00000031087 |
| Transcript |
| BRAKERXEIT00000031087 |
| Protein |
| BRAKERXEIP00000031087.1 |
| UniProt accession | Description |
|---|---|
| P70541 | Translation initiation factor eIF2B subunit gamma OS=Rattus norvegicus OX=10116 GN=Eif2b3 PE=2 SV=2 |
| A5PJI7 | Translation initiation factor eIF2B subunit gamma OS=Bos taurus OX=9913 GN=EIF2B3 PE=2 SV=1 |
| Q4R6T3 | Translation initiation factor eIF2B subunit gamma OS=Macaca fascicularis OX=9541 GN=EIF2B3 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005590 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00483 all species → | NTP_transferase | Nucleotidyl transferase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029044 all species → | Homologous_superfamily | Nucleotide-diphospho-sugar transferases | Interproscan |
| IPR051960 all species → | Family | Eukaryotic Initiation Factor 2B Subunit Gamma | Interproscan |
| IPR005835 all species → | Domain | Nucleotidyl transferase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45989 all species → | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT GAMMA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0002183 all species → | Biological Process | cytoplasmic translational initiation | Interproscan |
| GO:0003743 all species → | Molecular Function | translation initiation factor activity | Interproscan |
| GO:0005085 all species → | Molecular Function | guanyl-nucleotide exchange factor activity | Interproscan |
| GO:0005851 all species → | Cellular Component | eukaryotic translation initiation factor 2B complex | Interproscan |
| GO:0032045 all species → | Cellular Component | guanyl-nucleotide exchange factor complex | Interproscan |
| GO:0009058 all species → | Biological Process | biosynthetic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03241 | EIF2B3; translation initiation factor eIF-2B subunit gamma | - | Translation factors | ko03012 | deepkoala |
Genes whose expression across the transcriptome samples of Muricea muricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Muricea muricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
