Gene detail

Detailed information of BRAKERXEIP00000032209.1 in Muricea muricata

Genomic Location: not available for this species
NR annotation: CAB3979768.1, Sodium leak channel non-selective [Paramuricea clavata]
Species Muricea muricata · all data for this species · gene families

Sequence

CDS

BRAKERXEIT00000032209

ATGGAGGCCGATACGGGTGATGGCAGTGACTTGGCAAGTGATGTTTCTAATCCGAAGGCAACAACGACTACTGCTATCGAATCAAGCGGCCCTGAAGATGAGGAACATGATGATGACGAACCGCCTAGCGTTCAATTTGTCAAAAGTGTATATTTTAAACGTTTAATTCAAATATCAATCGTGCTTAGTACAATTTCAATCTGTATGAATAGTAAGAAGACGTTTGACGGATGCAAACAATGCTGGTATGTTACTTTAACGCTTGATATTTTagtgttttttatttttcttgttgaATCGCTTATGGATATGAAAATATCACGCCTGTGGAAAGGGGAGACGGCATTCCTCAAAAATCGCGTCAATTTATTCAAGTTAgcgatgttgatatttattCTGATGTCTGTAGTGTTACAAATTATCGAGGGACCTTCTTCGTCAGGACACGTCCCAGAATATTTAAAAGTAATAGCACGGGCTCCCCGCTCGTTCATCCTTATCAGAATTATGAAATACTTCATGAACTATTCTCTATTGACTCAAGTCTCGCGACGTTCGGGCAAACAAATCGGAAATGttacaatatttttattgtatttcaTGATCTTTGGCTCTTTAATCGGTGTTCAGCTTTTCGGAGAAGAGAGCTATTATTGTGTGAAAATAGGTGCAAAtcgtgaaaatatttcttataaAGATCTCAATTTGCCTGAAATACGCTGCAAAAGTCCAAGTACGAGCAACACGAGTAGCACAGAATCAGAATGTCCTGAACACTTTGTGTGTctaaatttaaaactttctCAAGATAAAAAAACCACGTATTTTGAGAATATTTGGGACAGTTTTTTGACTGTTTACGAAAGTTCCACACAAGAGGGATGGGTACTTGTAATGTACGCCCAAATGAAGAGTCAGAATTATTATGTCAGTGCGGTTTATTTCGTATCGTTGATATTCTTTGTGGCTTGGATGGTCAAGAGTGTTTTCATTGCTGTAATTACGGAAACGTTCGCTGACCTGAGATCGCAGTTGTATTTAAAGAACTGGCGCAATAATCGCCGGGTAACCGGCTTATCTTCTGAGATCATTCAAGACGACGGCATGGGTTGGCATTTGGTCGCTATTAAGGAAGAATGGACTAAGACAAAAGCTTTTAATCGTGCTAGACAATTCCTCACTTCTAAATACTTCCGGTATATGATCTGGACATTATTAGCACTGGACGCTATACTTCAAGCAGTTTTAGATCCTTTTAATCGCCGTTTTCTGCAGCTAGTGTTTACAATCATATTTGACCTAGAAACCCTTTTTAAAATTTGGTGTGTTGGCATGAAAAGTTATTGGAAAATCCCGGTTTATCGGTTCGAGGTTTTTCTTGCCGTGGGTAGCACCCTTTGTATCGCAGTTACATATTGGGAGATAGATATTTTAGTAGCTTTTCATGTTTTACGTGTGACACGTCTAATCATCGCAGTGCCCAGTTTGAGAGCCTTTCTATATAAGGCCTTTGGAACAGGAACTAAAATCGGTGCTGTAGTTGTATTCACGATGTTTTTTTTGGTTTTCGCGTCGAGCTTGAGTCTCCAGCTGTTTTCTGGTATTGAAGGACCTTTTGCTGACTATGTGAAGTCGTCAAGTTCTATGTTCCAAATTATTACTCAGGAAGGATGGGTTGAAGTTCTAGACGAAGTGAAGAATGCATCCCCACCAATATTAGCCCCTCTTATCAGTATTTACTTTACTATTTACAACCTCTTTGCATCACTTATCCTTGGAAGTGTTTTTATTGCTGTTATTCTTGATAACTTGGAAATTGAAGAGGaaacaaagattttaaaacaaCGCAAATTAGGCGAAGAAGTTTTGAATGTACAAGAAAGTTTGCCAAAGCGTCTtcaaatatttgcaaaattcaaAGAAAGTCCAAGATTAGTAGAAACTTGGAAAGTCTCTGGTGATTTTCCTGTTCCTAAAGTGCGACAGAGTTTTATGAGAAAGTTTCTGGACGACACACGAACGCGATTGTCCCGTTTTACAGCGAATCCTAGTGTGTACGAAGATGCACTAATGACCCAAAGAAAGGATATGCCATTCAAATTATTGAGTTCTCCCGTTCGTGATGATGTCCACACTCTAAGATTGAAGAAACGGACGAGTCTAACACAACTTATTCAGGACTCAACGCGGCGGCGTAATCTTACTGATCACACAGCAACACAGGGCAGGCACACAGCCAAGTCATACCTGTTAGGTTATACAGCACGGCAGATAAATCGTAATGCATCAAAACTAACACAAGGCGCACGCAAGACGTCCGAAAAAGCGGACATGAATGCATTACGACAAATGAAGAGTCAAGGTGGACATGGAGCTGCAACGTTACCTCATAACACGGGTGGAACTCGAAATACCGAGGACTGGAATATAGGAGAATTGCGAGCTCGACGTGAACAAGCACAAAGGGTAAAAGCTGCACACGAGGAGTCCCTACGTGAAAACCATCCGTACTTTGATTTCCCGCTTTTCCTTGTTTCACGTGACAGTGCTTTACGTCAATGGTTACAACGCATAGTTCATGCCCGTTACGACATCGCAGGTAACCATGGAGAAGGACAGTCCAAACGGCTGATTAACGATGACTTTATCAAGAGAGTGTTATCAACTCAAACGTATTTAGAATGGGTCATAATCTTCATTACATTCTCATCCTGTGTTGCAATGATGTTTGAGAATTCAAACAATCGGACATTTGATGATCCTGTGCTTGAATTCTTTGAGTATCTTTTTGTTGTTTCCACGAGTCTAGAGTTGGTCATTCGTGTTCTTGCCGATGGTTTAATGTTTACACCCAATGCAGTCATACGAAGCTTTGGTGATGTCATGGATATATTTATCTATCTCATTGGTTTTATCTATGTGTCTTCATCACCGACGATTATTCCCAAGGGTTCAGCAGCTTATGCACTTGTGGTTTTTCGCGCCCTTAGACCACTTAGAGTGATTAACCTTATTCCCAAAACGAGGCAAGTTATTCAGGAGTTGTTTGGTGGATTTAAAGAAATCCTAAAGGTTGCAGCTCTGCAATTAGCACTGATGTTTATCTTTGCAAGTTATGGTGTACAGATGTTTGATAATAAACTTAAGAAATGTAACGATGGAAGCATTGCTGCTAAAGAAAAATGTCGTGGGGTGTTTTATACAGAGATGAAAGAACCACGTGAAATGCGGGAATTAGCTGGCGATTCAAACAAAATGTTGGTTCCCAGAGTCTGGCAAAATCCGAAAAATTTTGACTTTGACaatattttgcatgcattatTAGCCCTGTTTGAAGCACTTTCACTGGAGGGCTGGTTGGATATAAGAAATGTTATTGAAGATTTGGGAATACATTATGGTTTTTATATTCATGGGTATGTTTTGCTTGCCTGCATGATCGGATTGGCACTTTTCGTCGGTGTTATAGTTAACAACTTTAACGAGAACAAAGGGACGGCACTTCTTACTGTTGATCAAAGAAGATGGGAAGATTTAAAAAAGAGACTGCGACTTACCCAGCCTCTTCATCTCCCTCTGCGTCCAGATGACAGTCCTGTCAGATCTAGATTATATGACCTCTTACAATCCAAACATTATGGTCGGGTGAATGTTTTCCTGGTTATTTTAAACTGTGCGACTTTGGCTGTTGTGCCCTGGATTGTTCATTCCGATATTTTACTTCCAAAGTTTCCAAAGTACTTGATGCTGATTTCGGCGGTATTCACTGGTCTATTTGTAATTGAATGCATTCTCAAGATTATTGCCTACACTTTCAGAGGTTATTGGAGAAGTCATCGCAACCGTTTTGACTTTTTTCTCACTTTGTTTGGTGTAGTGTGGATTATACTTTATGTAGCATTCGTCCACAATCATGATCATGACACGACCTACGACTCAACAGTTTGGTTAGGGGTTGTGATAATCCTGTTTCGGTTCCTAAGTCTATCTGGCAAACATGACACTTTAAAGATGTTAATGATGACAGTTTCAATGAGTTTAGTAAAGAGTTTCTATATTATATTCGTTGTGCTATTAATATTAATGTCGTATGCAATGATTGGAGTCATAATGTTTGGTACTGTTAAACATGGCGTGGCTATAAACCGCGATGCAAACTTCAAAGACAGTATTAGTGCAATGATAATGTTATTCCGGATAACGACTGGTGAAGATTGGAATAAAGTAATGCAAGATTGTCGAATACAAGAACCTTATTGTACTGAACCAATGAACTTGGAAAATTACTGGCAAACTGATTGTGGGTCTCATGTTGGAGCACTTTGTTACTTCATATCATTCTACGTGATCTTGACGTTTGTATTGTTGAATTTACTTATTGCTGTTATTATTGAAAACTTTTCTTTGTTCTACTCAAGTGAAGAGGATGCAGCTTTGAGTAATCAAGATGTGTATCAGTATCAATTGACTTGGAATCTAGTTGATAAAAATCGCAAAGGATTAATAACAGTTCGTCAAGCCAGACTAGTTTTACGGTTATTACGAGGCAACCTCGGTGTAGATCCTTCTACattcttatttaaacatatttgctTGGAAATTGAAAAGTTGCGAAGTGGACGTGAGGTGTCTTTCCATGATTTGTTGGAAATTCTAGCTTACCGATCAATTGACGATATATCTCGAAGTTTACAACTTGAGGAGTTGCTAGCTCGTGAGGAGCTGGAGCGGTCGATCGAGGAAGAAGTAGCTATACAAACTATACGTGATTGGTTTTTAAACCTCAAGAAGGAGAAAGCTGTGAAAAAAAGTCGTGGGTACTCGTTCGGCGGGGTGAGTTCAGCGTCGAGTGTTGAGACGGAATCAAGTGATGAGGAGTATCAGGAACAATCTAATAGACTGTCCGTGAAAGGATTCCAGAAACGAAGTGTAAGCTCCAAATCATCAACGCCATCTATTACTGTTACTGATGAACCTAAAGCTGAAGCGAAGGAAGAACGAAAAAGTGAACCACAACGAAAGAATGAAACAAAACTAGATGAATGGTTTACTAATCAAGTAAAATTATGA

Transcript

BRAKERXEIT00000032209

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BXR5	Sodium leak channel NALCN OS=Mus musculus OX=10090 GN=Nalcn PE=1 SV=2
Q6Q760	Sodium leak channel NALCN OS=Rattus norvegicus OX=10116 GN=Nalcn PE=1 SV=1
Q8IZF0	Sodium leak channel NALCN OS=Homo sapiens OX=9606 GN=NALCN PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007069 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028823 all species →	Family	Sodium leak channel NALCN	Interproscan
IPR027359 all species →	Homologous_superfamily	Voltage-dependent channel domain superfamily	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46141 all species →	SODIUM LEAK CHANNEL NON-SELECTIVE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005261 all species →	Molecular Function	monoatomic cation channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0032224 all species →	Biological Process	positive regulation of synaptic transmission, cholinergic	Interproscan
GO:0032230 all species →	Biological Process	positive regulation of synaptic transmission, GABAergic	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21863	NALCN; sodium leak channel non-selective protein	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.