Gene detail

Detailed information of BRAKERXEIP00000033189.1 in Muricea muricata

Genomic Location: not available for this species
NR annotation: XP_028404490.1, polypyrimidine tract-binding protein 1-like isoform X2 [Dendronephthya gigantea]
Species abbreviation MMURI · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P17225	Polypyrimidine tract-binding protein 1 OS=Mus musculus OX=10090 GN=Ptbp1 PE=1 SV=3
Q00438	Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Ptbp1 PE=1 SV=2
Q91Z31	Polypyrimidine tract-binding protein 2 OS=Mus musculus OX=10090 GN=Ptbp2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005087 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13893 all species →	RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	Domain	Interproscan
PF11835 all species →	RRM_8	RRM-like domain	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR021790 all species →	Domain	PTBP1-like, RNA recognition motif 2	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR006536 all species →	Family	HnRNP-L/PTB	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15592 all species →	MATRIN 3/NUCLEAR PROTEIN 220-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0043484 all species →	Biological Process	regulation of RNA splicing	Interproscan
GO:0006397 all species →	Biological Process	mRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERXEIP00000033189.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.