Gene detail

Detailed information of BRAKERXEIP00000033397.1 in Muricea muricata

Genomic Location: not available for this species
NR annotation: GHV49401.1, DNA-directed RNA polymerase subunit B [Spirochaetia bacterium]
Species Muricea muricata · all data for this species · gene families

Sequence

CDS

BRAKERXEIT00000033397

ATGCGGGACGGAGTTGCACAAAGTTATCCCCGTATTGAAATCGCTACCATTCCCATGATGTTCCGGTCGGAAAAATGCAGGTTACACGGTGTCGTCGGCCTTCCGTCGTACGGGGAATGCGAGTACGATCCCGGTGGGTATTTTATACTGAAAGGAAATGAACGTGTCCTCGTCACGCAAGTCCGTGGATCGTATAACATTCCAGCCGTGTTCGGCCATTCAAAGCACACATACGTTTGTCGAGTACGAAGTATGTCCGAAAAAACGTGCCATAGTTCTTTAACGGAAATGTACATTACACAATCCGGAACCGTACACGTCCAATTTGGGAATTTTAAAAAAGGGGCAAGCGCAGAGTACGAACACCTAATCCGTTTTTTAACAGTGGGCGACGTGGATATAAAGTCTTTGTTTAAATGCTCTGCAAATAACCTATTATCCGGCGCGTTCCCACACATGGGATTAAATCCGCGCGTCGAAGAGGTTGTACACTACTTGGAATACATGAAATCCATTTTGCAAAGAACGTTTGAAGGGTCACGCAAACCTGATAACATCGACAACATAGACAACAAACGGTTCGAAGCGTCCGGAGTTTTATGTTACGACTTATTCCATAAACTTTATAAACGGTTTTTAGGACAAGTGAAAACCAATTACGGCGAACGATGGGGTGCCGTAAAAACACTGTACACGCGTCCAGGCGTGTCGCAATTGCTTGGTCGTCTTAGTTATTGTGATACGTTAAGCCACCTACGTCGTATTTCCATTCCTATCGAAAAAGGGTCAAAAATTATAAAACCGCGCTACGTGAACAGTTCCCAATGCATGTTCATTTGTCCCGTTGAAACGCCGGAAGGACAAAGTGTCGGTATTGTTCTTAACATGGCCGTGTCGGCATGCGTATCCGAACGCAGGTGCACGACCTTAATCCGTCAAACCGTTGCATCCGCATGTAAAACTGTCGATAATGGGGAAAAAAGCGGCAGCGTTATTGTAATGGTATGCGGTCTAGTCACAGGATTCACTCATTACCCTAACAAACTTGTCGAACACCTACTGGGATTAAAACAACAAGGGGTGTTACAACACGACGTTTCCATTTTTTACGAAAAACATAATAATGCCGTTCACGTCATGTCAGACGAAGGTAGGTTAATTCGCCCTGTTGTCGTAACGGATAATAAACTGTCGTCGTTGTGGGGAGAAAACGTACGGTACGTTGACTATTCCGAGGTTAAAAATTGTAATTCTATATCGTTCGAAAAACTCAACGACGTTAAATATACATTTGCGTCCGGGAACATGTACGAATTATTGCCGAGTTTTATGCTAGGCATAATGCCAAGCACCATTCCGTACATTAACCATTCACAAAGTCCACGGAACTGTTACCAAAGTTCTATGGGAAAACAAGCGGTTTCCGTACCCGTGTTAAATTATACGACACGAACGAACGCTTTTCTTAACGTGGGTATGTACGTCCAAAAACCTATTGTTACGACACCGAACGAACTTTCGATGGGATTACAAAACTTACCGAGCGGTCTTGTTGCTATCGTTGCCATAGCGTGTTACGGCGGGTATAACCAGGAAGATAGCATTATCATGAACAAAGGGTCCATTGACCGCGGGATGTTCGTGTCCGATCATTACAAAACGTACACGGAAGAGGAAGGAACAGGCGTAAAAATATCTAAGCACGGGTTTAACCAACCGCGGTACGACTATTCGTTGCTCGACGATAGCGGTGTTATTCGCGAAGGGTGCGTTGTCGGTCCCGGTATCGTTTTAATGTCGGCATGCAAGGATTCTAAAGACGCGAGCACGGTCGCTTTGTACGAAGGGCAAGTTTCTAAAGTTGTTAACGTCACGCGTAAAAAACGGCTTGTTAAAGTTGTTGTACGGAGTTTGATGATTCCGCAAGCCGGCGATAAGTCTGCACAAAAAGGGACGTGTGGGATCGTTCTTCCACAAGAGGACATGCCGTTTACAAAATCCGGAATGAGCCCCGACATTATCATTAATCCGCACGCCATTCCTAGCCGCATGACCATTGACCATTTACTCGAAACCGTTGTTggtaaaaagtatttaaatgtAGGAATGTGA

Transcript

BRAKERXEIT00000033397

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91F97	Probable DNA-directed RNA polymerase II subunit RPB2 homolog OS=Invertebrate iridescent virus 6 OX=176652 GN=IIV6-428L PE=3 SV=1
Q8SR75	DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon cuniculi (strain GB-M1) OX=284813 GN=RPB2 PE=3 SV=1
Q197F1	Probable DNA-directed RNA polymerase II subunit RPB2 homolog OS=Invertebrate iridescent virus 3 OX=345201 GN=IIV3-009R PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001360 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00562 all species →	RNA_pol_Rpb2_6	RNA polymerase Rpb2, domain 6	Domain	Interproscan
PF04566 all species →	RNA_pol_Rpb2_4	RNA polymerase Rpb2, domain 4	Domain	Interproscan
PF04563 all species →	RNA_pol_Rpb2_1	RNA polymerase beta subunit	Family	Interproscan
PF04565 all species →	RNA_pol_Rpb2_3	RNA polymerase Rpb2, domain 3	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007120 all species →	Domain	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	Interproscan
IPR007646 all species →	Domain	RNA polymerase Rpb2, domain 4	Interproscan
IPR037033 all species →	Homologous_superfamily	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	Interproscan
IPR007644 all species →	Domain	RNA polymerase, beta subunit, protrusion	Interproscan
IPR014724 all species →	Homologous_superfamily	RNA polymerase Rpb2, OB-fold	Interproscan
IPR015712 all species →	Family	DNA-directed RNA polymerase, subunit 2	Interproscan
IPR007645 all species →	Domain	RNA polymerase Rpb2, domain 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20856 all species →	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0001055 all species →	Molecular Function	RNA polymerase II activity	Interproscan
GO:0005665 all species →	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0032549 all species →	Molecular Function	ribonucleoside binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERXEIP00000033397.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.