Gene detail

Detailed information of BRAKERXEIP00000033397.1 in Muricea muricata

Genomic Location: :...
NR annotation: GHV49401.1, DNA-directed RNA polymerase subunit B [Spirochaetia bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERXEIT00000033397

ATGCGGGACGGAGTTGCACAAAGTTATCCCCGTATTGAAATCGCTACCATTCCCATGATGTTCCGGTCGGAAAAATGCAGGTTACACGGTGTCGTCGGCCTTCCGTCGTACGGGGAATGCGAGTACGATCCCGGTGGGTATTTTATACTGAAAGGAAATGAACGTGTCCTCGTCACGCAAGTCCGTGGATCGTATAACATTCCAGCCGTGTTCGGCCATTCAAAGCACACATACGTTTGTCGAGTACGAAGTATGTCCGAAAAAACGTGCCATAGTTCTTTAACGGAAATGTACATTACACAATCCGGAACCGTACACGTCCAATTTGGGAATTTTAAAAAAGGGGCAAGCGCAGAGTACGAACACCTAATCCGTTTTTTAACAGTGGGCGACGTGGATATAAAGTCTTTGTTTAAATGCTCTGCAAATAACCTATTATCCGGCGCGTTCCCACACATGGGATTAAATCCGCGCGTCGAAGAGGTTGTACACTACTTGGAATACATGAAATCCATTTTGCAAAGAACGTTTGAAGGGTCACGCAAACCTGATAACATCGACAACATAGACAACAAACGGTTCGAAGCGTCCGGAGTTTTATGTTACGACTTATTCCATAAACTTTATAAACGGTTTTTAGGACAAGTGAAAACCAATTACGGCGAACGATGGGGTGCCGTAAAAACACTGTACACGCGTCCAGGCGTGTCGCAATTGCTTGGTCGTCTTAGTTATTGTGATACGTTAAGCCACCTACGTCGTATTTCCATTCCTATCGAAAAAGGGTCAAAAATTATAAAACCGCGCTACGTGAACAGTTCCCAATGCATGTTCATTTGTCCCGTTGAAACGCCGGAAGGACAAAGTGTCGGTATTGTTCTTAACATGGCCGTGTCGGCATGCGTATCCGAACGCAGGTGCACGACCTTAATCCGTCAAACCGTTGCATCCGCATGTAAAACTGTCGATAATGGGGAAAAAAGCGGCAGCGTTATTGTAATGGTATGCGGTCTAGTCACAGGATTCACTCATTACCCTAACAAACTTGTCGAACACCTACTGGGATTAAAACAACAAGGGGTGTTACAACACGACGTTTCCATTTTTTACGAAAAACATAATAATGCCGTTCACGTCATGTCAGACGAAGGTAGGTTAATTCGCCCTGTTGTCGTAACGGATAATAAACTGTCGTCGTTGTGGGGAGAAAACGTACGGTACGTTGACTATTCCGAGGTTAAAAATTGTAATTCTATATCGTTCGAAAAACTCAACGACGTTAAATATACATTTGCGTCCGGGAACATGTACGAATTATTGCCGAGTTTTATGCTAGGCATAATGCCAAGCACCATTCCGTACATTAACCATTCACAAAGTCCACGGAACTGTTACCAAAGTTCTATGGGAAAACAAGCGGTTTCCGTACCCGTGTTAAATTATACGACACGAACGAACGCTTTTCTTAACGTGGGTATGTACGTCCAAAAACCTATTGTTACGACACCGAACGAACTTTCGATGGGATTACAAAACTTACCGAGCGGTCTTGTTGCTATCGTTGCCATAGCGTGTTACGGCGGGTATAACCAGGAAGATAGCATTATCATGAACAAAGGGTCCATTGACCGCGGGATGTTCGTGTCCGATCATTACAAAACGTACACGGAAGAGGAAGGAACAGGCGTAAAAATATCTAAGCACGGGTTTAACCAACCGCGGTACGACTATTCGTTGCTCGACGATAGCGGTGTTATTCGCGAAGGGTGCGTTGTCGGTCCCGGTATCGTTTTAATGTCGGCATGCAAGGATTCTAAAGACGCGAGCACGGTCGCTTTGTACGAAGGGCAAGTTTCTAAAGTTGTTAACGTCACGCGTAAAAAACGGCTTGTTAAAGTTGTTGTACGGAGTTTGATGATTCCGCAAGCCGGCGATAAGTCTGCACAAAAAGGGACGTGTGGGATCGTTCTTCCACAAGAGGACATGCCGTTTACAAAATCCGGAATGAGCCCCGACATTATCATTAATCCGCACGCCATTCCTAGCCGCATGACCATTGACCATTTACTCGAAACCGTTGTTggtaaaaagtatttaaatgtAGGAATGTGA

Transcript

BRAKERXEIT00000033397

Protein

Uniprot

Uniprot term	Description
Q91F97	Probable DNA-directed RNA polymerase II subunit RPB2 homolog OS=Invertebrate iridescent virus 6 OX=176652 GN=IIV6-428L PE=3 SV=1
Q8SR75	DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon cuniculi (strain GB-M1) OX=284813 GN=RPB2 PE=3 SV=1
Q197F1	Probable DNA-directed RNA polymerase II subunit RPB2 homolog OS=Invertebrate iridescent virus 3 OX=345201 GN=IIV3-009R PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00562	RNA_pol_Rpb2_6	RNA polymerase Rpb2, domain 6	Domain	Interproscan
PF04566	RNA_pol_Rpb2_4	RNA polymerase Rpb2, domain 4	Domain	Interproscan
PF04563	RNA_pol_Rpb2_1	RNA polymerase beta subunit	Family	Interproscan
PF04565	RNA_pol_Rpb2_3	RNA polymerase Rpb2, domain 3	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007120	Domain	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	Interproscan
IPR007646	Domain	RNA polymerase Rpb2, domain 4	Interproscan
IPR037033	Homologous_superfamily	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	Interproscan
IPR007644	Domain	RNA polymerase, beta subunit, protrusion	Interproscan
IPR014724	Homologous_superfamily	RNA polymerase Rpb2, OB-fold	Interproscan
IPR015712	Family	DNA-directed RNA polymerase, subunit 2	Interproscan
IPR007645	Domain	RNA polymerase Rpb2, domain 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0001055	Molecular Function	RNA polymerase II activity	Interproscan
GO:0005665	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0032549	Molecular Function	ribonucleoside binding	Interproscan