Detailed information of BRAKERXEIP00000034909.1 in Muricea muricata

Genomic Location: chr2:13436949...13448871
NR annotation: XP_028403722.1, calcium homeostasis endoplasmic reticulum protein-like [Dendronephthya gigantea]
Species Muricea muricata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8IWX8Calcium homeostasis endoplasmic reticulum protein OS=Homo sapiens OX=9606 GN=CHERP PE=1 SV=3
Q8CGZ0Calcium homeostasis endoplasmic reticulum protein OS=Mus musculus OX=10090 GN=Cherp PE=1 SV=1
O49570SUPPRESSOR-OF-WHITE-APRICOT/SURP RNA-binding domain containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=SWAP1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004317 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04818
all species →
CIDCID domainRepeatInterproscan
PF01805
all species →
SurpSurp moduleFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008942
all species →
Homologous_superfamilyENTH/VHSInterproscan
IPR035967
all species →
Homologous_superfamilySWAP/Surp superfamilyInterproscan
IPR006569
all species →
DomainCID domainInterproscan
IPR000061
all species →
DomainSWAP/SurpInterproscan
IPR039037
all species →
FamilyCalcium homeostasis endoplasmic reticulum proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12323
all species →
SR-RELATED CTD ASSOCIATED FACTOR 6Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →
Molecular FunctionRNA bindingInterproscan
GO:0006396
all species →
Biological ProcessRNA processingInterproscan
GO:0006874
all species →
Biological Processintracellular calcium ion homeostasisInterproscan
GO:0048471
all species →
Cellular Componentperinuclear region of cytoplasmInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for BRAKERXEIP00000034909.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Muricea muricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Muricea muricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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