Gene detail

Detailed information of BRAKERXEIP00000035133.1 in Muricea muricata

Genomic Location: :...
NR annotation: CAB3983198.1, Very low-density lipo receptor [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERXEIT00000035133

ATGTCTTGCTATGGTGATGAATTTATGTGtgtgaaaagtaaaaaatgtaTTTGGAAGACTTGGGTTTGTGATCATGACAATGATTGTGATGATGGAAGTGATGAAGTTAATTGCCCTGTCAGTGAGTGTGTTAATGGGTTTCAATGTGCAAATGGCAAGTGCATTGATTCAAATTGGAGGTGCAATCATGATTATGATTGTGATGATAAATCTGATGAAGAAAGTTGCACATACAAGCCATGTGATCTTCGATGGGAATTTCAATGCAACGACAAGCGTTGTATCCTTAAGGAAGCGTTTTGTGATAATCATTATGATTGTGAAGATAGATCAGATGAACCAGAAGGATGTACTTCGACAACTCAACACAAAAATAAATGTCCTGACACCCATTTTGATTGCAAAGATGGAACCTGTATTAAGAAGGAATGGAAGTGTGATGGACGTCCAGATTGTGTTTCTGGAGATGATGAAAGGACATGCACTTCAACTTGTCCTGAAGGCCAAATCAGATGTCAAAGTGGTGAATGTATCTCAAAGTCCTTGAAATGTGATGGAAAAGCCAACTGTGAAGATCAATCTGATGAAAAGAATTGCGGTCCATCTTTGCTCAAATGTAAAAAGGGGGAATTCAAGTGTGGCACGTCTGAAAGGTGTATCAGTGAATCGTTGTTATGTGATAATCAGAGTGATTGTGCTAATGGCGAAGATGAAAGTCAACTCTGTGGTGTAGATGAGTGTTCGAAGGAGAATGGTGGATGCGAGTACAAATGTCATGATTTGAAGATCGGACGTCGCTGTTCATGCCCCGAAGGGTTTGAACTTAAAGATGATAAAAAATCTTGCCAAGATATAAATGAGTGCAATGAATTTGGTAAATGCAGTCAGATTTGCGAGAATATCAAAAGTGGAGGTTATAAGTGTAGATGTGTGGCTGGTTATCGTTTGGAAAGCAAGGATCACAGAACGTGTAAAGCTATAGAACGAAACCCGTATCTTGTGTTCTCTGATCACTTTTCCATTCGGAAGTTATATCTTCATAAGTCTCGATTCTTCGGTATAGTTCGAAACTTGGTTGGGATTATTGCAGTAGATTATCACCTTGGTAAAAACTGGATGTTTTGGTCAGATCAGAAAAACAATTCTATTCAACGAACCAGTTTGGGCATTAGTGGTGACTTCGTAAAGGAAACAATCATTACAAATGTTCATTCTCCTGATGGCATTGCAGTTGATTGGGTAACTAGCAAATTATACTGGACAGATGCGTGGCAAAAACGAATTGAAGTTTCTGACGTGCATGGTCGACACCGCTGTTCTTTGATCACCACCGATATTGATATGCCAAGAGCTATTGCAGTTCATCCGTATAAAGGGGTAATGTTCTGGACTGATTGGGGTGATAAGCCAAAAATTGAGAAATGTGGTATGGATGGAGATCCCACAACTAGAAAAGCAATCATCACAACAAAAATTATGTGGCCTAATGCTCTTACTATTGATTATACTATAAACAGTATCTGGTGGATTGATGCTAAACTAGATTTTATTGAGCATTGTGATTTGGACGGCGGGAATAGACGTGTGATTTTGGGTCAGGATTCCGTTCACCACCCATTTTCAATATCCATATTTGAAGACCACATATATTGGAGtgatttgtacaaaacggcgatATATAAAGCAAATAAATTTACCGGGAAGAATGTGACTTTTCTGAAACAAGGCTTGGTGAACACCCTTGGAATTAGTATGATTCATCCTCAGAGACAACCTGCATCTTTTAACTTTTGTCAGGAGAACAATGGTGAGTGCAGTCATTTATGTTTGCTGTCAGCTGAACAGCATAAGAAATTACGTCGCCTTTCTTGTGCTTGTCCTGAAGGAATGAACTTGTTACCCGATAACAAAACGTGTAATACTTCAGATGCATTGCTATGTAAGAAGGGCATGTGTTTTAACGGTACATGCATTCCTGGAAATAAATCTGGTGGCCCACGTTGCCAatgTGACAAAGGTTATACCGGTGCTTATTGTCGAACGAAAATTTTATCTAAAAGCACAAAGGATAATAGCGATGCTAATGCTGTTACCATTGGAATAAGCGTTGGTGTTGTTGCGATAATATTCATCGTTTTTGGTATTGCGAGTGGTGCATTTTACATGAAGCTTCAGAAGAGGAGTTATACAACTCCTGACTTTATGAATCCAGTGTACCCTCCGACTACGGATCCTATAGAGGCTAATGGAAGGCGCGGACCTATCTTTAAGTTAGGATTCATGAGACCGcatcaaaaaaagGTGCCGGAGCCAGTAAGTTCAAAAAACGTTGTTGTTATCGACTCTAAATTGCAACTCAAAGAACTGTACGGCGTTAAAATAAGCAATAAAGAAGTATTTGTGGAATTACTTCAAGTTTTAAAACGAAAAGAGGAAGAGAATGATATGATGAATACGACTGACGATACAACAAGCAGTGATAATTATAGTGGCACGACTGATACATTTCGTCTGGTCACATCACTTGAATTTGAAGAAGGGTTACTCAAATGTGCGTTGACCAAGTATTTCGGACATGAAGCATTTCGACCGCTTCAAAAGGAAACGGTTGAAGCGACATTAGCGGGGAAATAA

Transcript

BRAKERXEIT00000035133

Protein

Uniprot

Uniprot term	Description
P35951	Low-density lipoprotein receptor OS=Mus musculus OX=10090 GN=Ldlr PE=1 SV=2
P20063	Low-density lipoprotein receptor (Fragment) OS=Oryctolagus cuniculus OX=9986 GN=LDLR PE=2 SV=1
P98157	Low-density lipoprotein receptor-related protein 1 OS=Gallus gallus OX=9031 GN=LRP1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR051221	Family	Low-density lipoprotein receptor-related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22722	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006898	Biological Process	receptor-mediated endocytosis	Interproscan
GO:0016324	Cellular Component	apical plasma membrane	Interproscan
GO:0042562	Molecular Function	hormone binding	Interproscan
GO:0043235	Cellular Component	receptor complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20053	VLDLR; very low-density lipoprotein receptor	-	Membrane trafficking	ko04131	deepkoala