Gene detail

Detailed information of BRAKERXEIP00000035778.1 in Muricea muricata

Genomic Location: not available for this species
NR annotation: XP_028416632.1, RNA 3'-terminal phosphate cyclase-like [Dendronephthya gigantea]
Species abbreviation MMURI · all data for this species · gene families

Sequence

CDS

BRAKERXEIT00000035778

ATGGGATGCCTTTTGGTCCTTTTGGTGTGTTGTATCTATCACCAACCAGATTTTCGGACTGGAAGCTACATAAAATTTACCCAGACGCTTTTCTCAAGCAGAGTGTACAAAATTTTGGCCAATTGTACATCCGTGGTTAGTGTAACAGCGATTGCCGTCGGGATCTACATCTTAATTAAAGAAGGAAAGAACTGGACCGATTTCATTGTATCATTTCTTTTAGCGCTAATTGCGTCAAGAAGTCTCCTTGTCAATAAGAGCAATGGTCTCAACATGGACTCCGAAAAATTCTCTGCGTTAAGAATTTCCCGTGGAAATGCCCTGATGAGTGTATTAAACTTTTTTCTGACCACCAACACCGCTGTTTTGGATGAAATAGAGGCACAGATCATGAAGAAAGGGCTCCCAGATGATGTGGCAGCAGCTGACATCCATGAGCAAGGATTCTTAGCGTATTTTGACTGGAGTCCTCTCAGCGACGAAGACATAAACCTATTTCTGACAAGCAACGACAGCAACAGTTCTGGTGAAATGAAAGAAAGGCCTACAATCTTATGCCAAGATTCTCCCACGAGCGAGTGCCGAAGATGTAGTTATGGTTATGTAGGCTGGAGAAATTCTAACTTGTATATTCGCTCATTTGCCGCGCAAACACATGAACTGAAACGGAAAAAGGCAGCAACATTTTATGAAAGTTTAGGAGTGTTGCCCACTGCTACACAAAGTGAAATCAAGAATGTCTATTATGAATTGGCATTGAAATATCACCCCGATACGAACAACGATGTACAGACTCAGGACATATTTAGAGAAATAACTCGGGCATATCAGGTACTTGGAAATGTTGAGACAAGGAAAGTTTATGATCAAGAAGTCGGGTCATATTTTGTACTACGAGGATCCACAAAGAATGAGACAATACGTCCAGTTTGGAGACTGCTTGATGGCAGAATTGTTAATATTGAtgcaagaaatataaaacagGGtgaatcatttatctgtcattTGTCATCATTAAGCAGTATTTTAGGAGTGCCAGTTCGAGTAACAAATATCTGTAGAAATTCTCTGATTCGTGGCATTCCAGCCAACGAAATGCGGACTGTTATGTTACTCAGGCAGATATGTAATGGTACATTGTCAGGCTCAACTGGATCATCAACTCTAACTTTCTTGCCATCTGATCTCCAGTGTGGACGCTACTATATGGATGCCTACCAATTCGGGAATGTAAGTGATCTTATTCCGTATGCCATACCTTCACTGATGTTTGCACCTAATCCCCGCGTTGGTCGCAACAATGTACTGTTTTTAACTGGTCCAACCTACGCATATAATGGCTTGCATATTGACCACATATCCAAGGTGTATCAGCCGACAATGAGTCGTTTTGGAATAAAATTTGATGTTGAAGTAAAGAAAAGGGGATATTTACCTTACGGTCGAGGGAGCGTTGTGGTAAGGTCAAATCCTGTCCAATGTCTTGACAATATACACATGACAGATCCAGGCATTGTCAGCAAGATCACAGGACGAGCATTTGTAGCCGGTGGGAAACCCGTGAAGATTGCGCAAAGAATGGCGAAACAGGCTCAGATGTTATTGAGAGGACTGTTTCGCGACGTTCCTATTACAATAGATTCTGTCCGTGAGTCTGACAGCAGATCAGAGGGCATGGGGCAAGGCATCGTAATTGTAGCGGAGACGTCCACGTCGTGTGTATTTTCGGGCTCAGGATTGTGGAAAAAAGGTGTGGAAACAGAAACTGTGGTCGAAGATGCAATGAAAGAGCTTATGAGTAATATAAATTCTGGAGGTTGTGTTGATAGCTGGATGCAAGATCAGATTATTACCTCGATGGCACTCGCAAGAGGAAACTCTGTTGTTAGGACTGGACTTCTTACGTTCAAAACAAAGGTCGCACTGAAGGCTATAAAACATTTAACCAAGgttCGTTTCAAAATAACCAAAGAACATCCACTGCAAACAAACCTCGTTAGATGCATAGGCCTTGGGTACACAAACCTGTATCTGGACTAA

Transcript

BRAKERXEIT00000035778

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D7H3	RNA 3'-terminal phosphate cyclase OS=Mus musculus OX=10090 GN=RtcA PE=1 SV=2
Q4R3J0	RNA 3'-terminal phosphate cyclase OS=Macaca fascicularis OX=9541 GN=RTCA PE=2 SV=1
Q2HJ88	RNA 3'-terminal phosphate cyclase OS=Bos taurus OX=9913 GN=RTCA PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001906 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01137 all species →	RTC	RNA 3'-terminal phosphate cyclase	Domain	Interproscan
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan
PF05189 all species →	RTC_insert	RNA 3'-terminal phosphate cyclase (RTC), insert domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036553 all species →	Homologous_superfamily	RNA 3'-terminal phosphate cyclase, insert domain superfamily	Interproscan
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR023797 all species →	Domain	RNA 3'-terminal phosphate cyclase domain	Interproscan
IPR037136 all species →	Homologous_superfamily	RNA 3'-terminal phosphate cyclase domain superfamily	Interproscan
IPR013792 all species →	Homologous_superfamily	RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta	Interproscan
IPR013791 all species →	Domain	RNA 3'-terminal phosphate cyclase, insert domain	Interproscan
IPR018253 all species →	Conserved_site	DnaJ domain, conserved site	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR000228 all species →	Family	RNA 3'-terminal phosphate cyclase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11096 all species →	RNA 3' TERMINAL PHOSPHATE CYCLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0003963 all species →	Molecular Function	RNA-3'-phosphate cyclase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERXEIP00000035778.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.