Gene detail

Detailed information of BRAKERXEIP00000037415.1 in Muricea muricata

Genomic Location: :...
NR annotation: XP_028403599.1, ATP-dependent RNA helicase DDX4-like isoform X2 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERXEIT00000037415

ATGAGCTGGCCACATGGTTCAACGGAAATTGACGAGAGGTCTCAAAATAACAATATGTTTGCCAGTAAATCTGCTTTACAGTCCAACAAAGGTGGAAGTCAAGGAGATCGATTCCCCCTATATGTTACAAACATACCTGTTGATATGGATGAGGATGGATTGAAAGAAATGTTCAGCGAGGCAGGAAACGTAATCCATGCAAAATGCCTTCCTCCCAAAGAAGGTCGCAATTCAAAAGTTGGCTTTGTCACCTTCCCTACAGAGAAAGAGGCTAAACGTGCAATTTCAACATTTAAAGACCATCAGACCATCACGGTAGATTATACAAAATCATTCAAAGAGCAAAGAGCTCAGAACGCAGGAAAGAGTGATTCGCCATTTTCCTCTGGAAACAAAGGTCCTTCTCTTTTCTCTGGAAATAATAACGCTGCGAATCCCGGTGCAATGAGTAGCTTTGGTGCACGTAAAAGCCCCCAACAATCTAATTTAAATGGCCCGTCAGGTATCGGTAGAGGTATTCATTATGACAATGAAGCTGAAAGCCAGCCTGGTTCTATGGTAAACGGACAAACTCAAAGGTTGTTTAATGTTGCGCCAGGAACGCCAGCCCAAGGTCAAGTCGGCAAACAAGATAGCTCCTCATCTTCTAATCACACCATGTATGGACAGTCCGATAACCAGAATAATCTGGAGGCTACTCCTAGTGATTCAACATATGAAAATTTCAGTCCAGCAGCTGAAATTCCAACTCAACCGACCGACCAGATTTCGTATCAGTCAAACGTGAATACAATGGCTAACGGCTTTAGTTCAATGTATTTAACACAATCAGCTGACCAGGTTCAAATGAGTGATGGTCAAAATGAACAGCAAAGTAACCAAAACCAGTACGGTTATTCTCAGTCCTATGATGCTAACGAACAGCAAAGTAATCAACACCAGTACGGTTATTCTCAGTCCTATGATGCTAACCAAGCCTATAATGAGAATCAAACTTATGTTGCGAATGACCAGAATCAGGCCTATGATCCAAATCAAACAGATGAGCAGAATCCGGCATATGGCCATAGTCAGTCACAGGATCCAAATCAGGCTTATGATCCCAGTCAGGCATATGGTGAGAATGCTGCATATACACAAAATCAGAGTCAGGCGTATGAAGAATCTCAGGTTTATGATCCGAATGCAGCATACTATCAGAGTCAGTCCTACGAGAAAAACCAATCTTATGATCCAAACCAAGCTTTTACTCAAAATCAAACGTATGGTGAAACTCCGACGTACGAACAGAACCAAGCGTATAGTGAAAATCAGTCTTATAATCAGAATCAGACTTATGACCAAACTCAACAATACGATCAGGCGTATGCTCAAGAGCAAGGCTATGGTCAAAATCAGTGGTATGGTCAGAATCAGTCTTATGATGGCAATCAGGCGTATGATCAGAATGCTGCTTACGATCCAAATCAAGCGTATGGTCATAATCAAGCGTATTCGCAGGAGACGTATGACAAGGACCAGATCTATGATCAGAAACAGTCCAATGACCATCAACCGATCTATGATCAGAAACAGGCAGATGATCAGAACAAGACCCATGACCAGAACCACGCCTATGATCCTAGCAACGAGTCGCCAGCGTCAGCACAGTACGAAACGCCTAAACAGAATCGGTCTTTTGATCAAATGTTTGCTGGAATGTCAAAGGCAGGTGATGGTCAGCAACAGTCGTTTGGGCAAAATCAGTTCCAGGTTTCCAGCCGTCTACCTAAATCTAATAATGATTCAGGCGGGAAAACATGCCACAATTGTGGCCAACCTGGTCATTTCTCTCGGGAATGCCCAACCAAAAAAAGTCCTGGAGGTGCTTGTCATCGTTGTGGGGAAAGTGGGCACTTCGCTAGAGAATGTCCGAGCAGTGGAGGTAGCTCGGGCGGCGGTGGTACATGCCATAATTGTGGACAACCAGGACACTTTTCTCGTGAATGTCCAAGCAAGTCTAGCGGGGGTGGATCGTGCCACAAGCGTGGAGAACAAGGTCACTTTGCTAGAGAATGTCCTCAGAGCGATCAAGGTACATGTCCACGACCAGAAGCGAGGGTAGATTATGTTCCTCCACCTTTGCCTGAAGATGTCGATACACTGTTTAAATCTGCAGTTCACAAAGGAATCAATTTTGATCGATTCGATAACATTCCCGTAGAAGTGACTGGGAACAAACAACCGGCAGCCATACAAACATTTGATGAATTATTATTACCAGACACATTGAAATCCAACATTGCTAGAGCAGAATTTACAAAACCAACTCCAGTACAGAAATACGGTATGCCCATCATTCTTACGGGTCGTGATATTATGGCGTGCGCTCAAACTGGTTCAGGAAAAACGGTAAGATTTTATGTTTTTACTGATATAGTGCACCAGTTCGAACATGCTTGCAACTTTCTGAGGCTGACGAACGTCAATTAG

Transcript

BRAKERXEIT00000037415

Protein

Uniprot

Uniprot term	Description
Q9NQI0	Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens OX=9606 GN=DDX4 PE=1 SV=2
Q64060	Probable ATP-dependent RNA helicase DDX4 OS=Rattus norvegicus OX=10116 GN=Ddx4 PE=1 SV=1
Q4R5S7	Probable ATP-dependent RNA helicase DDX4 OS=Macaca fascicularis OX=9541 GN=DDX4 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47103	-	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan