Gene detail

Detailed information of BRAKERXEIP00000037734.1 in Muricea muricata

Genomic Location: :...
NR annotation: XP_028413042.1, transitional endoplasmic reticulum ATPase [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERXEIT00000037734

ATGTGTCACAAAATAATCCTGGTTTTGGCATTTCTGTTGGCTGTTTTGGATATAGGCAGTTCCATAGTATGTCATTTCTGCAGTTTCAATCCAGCATCACCACAGAAATGTACTCTGGGCCGTTCTCAGACTTGTGACAACGCGACATACTGTTTTACTGCGACTTTTACTTATGATGATGGCAAGGTAGGAGAAATGCGTGGTTGCAAACCTGTCACCGATCCGGTTCAGTACTGTCCTGACTCAGAAGGTACCTGTAAAGAAAtgagcaaaatgttttcccTGTCGTCATGCAATGGAAGACAAGAGAAACAGGAGGAACTTGCGACGGCTATTTTAAAGCAGAAAGCTAAACCTAATAGGTTAATCGTTGATGAAGCAGTTAATGATGATAATTCAGTTGTTACTTTATCTCAGGCCAAGATGGACGAACTGCAATTATTTCGGGGAGACACTGTCCTTGTGAAAGGGAAAAAAAGACAGGACACTGTGTGCATTGTATTAAGTGATGAAACATGCCCAGATGAAAAAGTGCGCATGAATCGTGTCATACGGAGAAATTTAAGAGTCCGACTTGGAGATATAATAAGTCTACAGGCATGTCCAGATGTaaaatatggcaaaagaatccaTGTTCTTCCTGTTGATGACACTGTGGAAGGTCTTACAGGAAACTTGTTTGATGTTTACCTAAAGCCGTATTTTCTGGAAGCGTATCGGCCTATTAGAAAAGGTGATATGTTTCTGGTTCGGGGAGGTATGCGTGCAGTGGAGTTCAAAGTTATTGAAACTGATCCATCTCCATATTGTATTGTTGCTCCCGATACTTTTATTCATTGTGAGGGTGAACCAGTCAAACGTGAGGATGAAGAAGAGTCATTGAATGAGATTGGTTATGATGATGTTGGTGGATGCAGAAAGCAATTGGCTCAAATCAAAGAGATGGTGGAATTGCCTTTAAGACATCCTCAGCTTTTTAGAGCCATTGGTGTCAAACCTCCAAGAGGAATTTTGTTGTATGGACCACCTGGTACAGGAAAAACATTATTGGCCAGAGCTGTTGCCAATGAAACTGGTGCTTTCTTCTTCTTAATCAATGGACCAGAAATAATGAGTAAGCTTGCAGGAGAATCAGAAAGCAATCTGAGAAAAGCATTTGAAGAAGCAGAGAAGAACTCACCAGCCATCATATTTATTGATGAAATTGATGCCATTGCTCCGAAACGAGAGAAGACTCACGGTGAAGTAGAACGACGTATAGTCTCACAATTATTGACCCTGATGGATGGCTTAAAGCAACGTTCACACGTGATTGTTATGGCTGCCACTAACAGACCAAACAGTGTTGATACTGCATTGAGAAGATTTGGTCGTTTTGATCGTGAAGTTGATATCGGAATTCCTGATGCGACAGGAAGGTTGGAAATTCTGCGAATTCATACGAAAAACATGAAGTTAGCTGACGATGTTGACTTGGAACAAATTGCGGCTGAAAGCCACGGTTATGTTGGTGCAGATGTTGCATCACTCTGCAGTGAAGCTGCTCTACAACAGATTCGCGAGAAAATGGATCTAATTGATTTGGAAGATGAGACAATCGACGCTGAAGTTCTTGATTCACTTGCAGTCAATATGGATGATTTCAGGtaCGCAATGGGAGCATCCAACCCATCAGCCCTCCGTGAGACAGTGGTTGAAGTTCCTACAGTGACCTGGGATGATATCGGTGGTTTGGAAAACGTCAAGAAAGAACTGCAAGAATTAGTTCAATATCCAGTGGAACATCCAGAGAAGTTTCTCAAATTTGGTATGACACCTTCCAAAGGTGTTTTATTTTATGGTCCACCAGGTTGTGGTAAGACACTGCTGGCCAAGGCTATTGCAAATGAATGTCAAGCTAACTTCATCTCAATCAAAGGACCAGAGCTGTTGACAATGTGGTTTGGTGAATCTGAGGCAAATGTTCGAGATGTCTTTGATAAGGCTCGAAGTGCTGCTCCATGTGTTCTGTTCTTTGATGAACTGGATTCCATTGCAAAACACAGAGGAGGAAACGTTGGTGATGGCGGTGGTGCGGCTGATCGCGTCATCAATCAAGTGCTCACGGAAATGGATGGAATGAACGcgaaaaagaatgttttcattatcGGAGCAACTAACAGACCAGATATTATTGATGGAGCCATCTTGCGTCCAGGACGTTTAGATCAGTTGATATATATTCCATTACCTGATGAACCGTCTCGAgtctcaattttaaaagcatGTCTAAGGAAATCTCCAGTTGCCAAGAATGTCGATATGAATTATATTGCCAAAGTGACGCGTGGTTTCAGTGGTGCTGATTTGACTGAGATCTGTCAGAGGGCTTGTAAACTTGCTATCCGTGAATCAATCATGTCAGATATTGAAAGGGAGAAAAAGCGCAGCGAAAATGCAGATGGAATGGAtgttgaagatgatgatgattacGATGCTGTTCCAGAAATACGACGCGATCATTTTGAAGAAGCCATGAAATTTGCTCGTCGTTCTGTCACTGATAATGATATTCGTAAATATGAGATGTTTGCTCAGACATTACAACAAAGCCGAGGTCTCGGAGGATCAAACTTCAGGTTCCCCAGCACAGCAGAGAGCGGTTCTGCAAACGAGCCTGCGGGTGGAGCAGGCGGTGCGGGTGGTAATCAATACGATGATGGTGATGACGATTTGTATAGTTAG

Transcript

BRAKERXEIT00000037734

Protein

Uniprot

Uniprot term	Description
P46462	Transitional endoplasmic reticulum ATPase OS=Rattus norvegicus OX=10116 GN=Vcp PE=1 SV=3
P55072	Transitional endoplasmic reticulum ATPase OS=Homo sapiens OX=9606 GN=VCP PE=1 SV=4
Q01853	Transitional endoplasmic reticulum ATPase OS=Mus musculus OX=10090 GN=Vcp PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17862	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF02359	CDC48_N	Cell division protein 48 (CDC48), N-terminal domain	Domain	Interproscan
PF02933	CDC48_2	Cell division protein 48 (CDC48), domain 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041569	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR009010	Homologous_superfamily	Aspartate decarboxylase-like domain superfamily	Interproscan
IPR004201	Domain	CDC48, domain 2	Interproscan
IPR005938	Family	AAA ATPase, CDC48 family	Interproscan
IPR003960	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR003338	Domain	CDC48, N-terminal subdomain	Interproscan
IPR029067	Homologous_superfamily	CDC48 domain 2-like superfamily	Interproscan
IPR050168	Family	AAA ATPase domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23077	AAA-FAMILY ATPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0030433	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0030970	Biological Process	retrograde protein transport, ER to cytosol	Interproscan
GO:0031593	Molecular Function	polyubiquitin modification-dependent protein binding	Interproscan
GO:0034098	Cellular Component	VCP-NPL4-UFD1 AAA ATPase complex	Interproscan
GO:0051228	Biological Process	mitotic spindle disassembly	Interproscan
GO:0071712	Biological Process	obsolete ER-associated misfolded protein catabolic process	Interproscan
GO:0097352	Biological Process	autophagosome maturation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13525	VCP, CDC48; transitional endoplasmic reticulum ATPase	-	Exosome	ko04147	deepkoala