Gene detail

Detailed information of BRAKERXEIP00000039416.1 in Muricea muricata

Genomic Location: not available for this species
NR annotation: CAB4002776.1, telomerase Cajal body 1-like [Paramuricea clavata]
Species Muricea muricata · all data for this species · gene families

Sequence

CDS

BRAKERXEIT00000039416

atggcggatgacaaGGAGCGCACGGAAATTAAAAGACAATTAACTGAGTTAACTGAATTGCGGACTCCAGACAGTAAAGTTTTAGGGGCGAATAAAAATAATCCTACAGTAGCTGAAATTTCAATAAGTGAAAACGTTTttccaaaaaatacaaaacaacatttAAACCAAGTGAGAAATACTCAAATAGAACCTTTTGAAAATGATAGTTGTCTTCCACAAGTGAGCTACTCAGACACTCATGTATCTATGGATGAAACAGATGCGTGCCTAGGACCTATTGACTTATGCAAGCCTTCTGAAGATGATACAAGTAATTGTGAAGTTAGTGTAGAAACTATAACACCAATATTAGAAGTACAAAATGATGGGGACATTCAGTCTTATAACAATCAGACAGAAACTACTATGGAATCTCAACAAAGGACAGATAATGTAGTAAGGTATCAAGTTGATTTCAATGCTACACCTGTCCAAGTTACAGGATCATGGAGAGATTTTGAAAGCATTCCTCAAAACTTTCTAAAGGGTTGTAAATGGTCTCCAGATGGAACATGTATTCTGACATGTAGTGATGATAATATATTAAGAATTTTTAATCTACCAATTGAACTATACTCTGATTTTATTTCCTGTGATGTTCTGCCTGAAATGAGCTCAGTACTGAAAATGCGAGAAGGAGAAACAGTTTATGACTATAATTGGTATCCTAAGATGTCCTCGTATGACCCTGACACATGTTGTTTTATCAGCACCAGTCGTGACCACCCCCTACATTTATGGGATGCTTTTACAGGAAAAATACGATGCACTTACCGAGCTTATAACAATATGGATGAAATTGTATCCCCTCATTGTGTAGCATTTAGTTTAGACGGAAGTAAGATATATTCTGGGTTTAATAAAATGGTCCGAGTCTTTGATACTTCTCGACCAGGAAGAGAATGCCAAAAACGACCAACAGTGACTAGAAAACAAGGCCAGTTTGGGATTATCTCGTGTATTGCAGTTTCTCCAGAAAATAATGGTCTTTATGCTTGTGGATCTTTCTCCAAGTCAGTTGGTATTTATGCTGAGCCAAAAGGTAATTTATTGACTCTGGCTGAAGAACATCAAGGTGGAGTGACACATTTAGTATTTTCTCCAGATGGACACAAGTTATACAGTGGAGGAAGAAAGgaTAATGAAATCATATGTTGGGACATGAGATATCCTGGAGCTATCTTAAACAAACTGTTGAGATCTGTTAATACAAATCAACGAATGTATTTTGATGTTGATAGTTCAGGTAAATACCTGGTGTCTGGCAATCATGATGGAACTGTCAGTATTTGGGATACTTGCACTTCTTCTGATGTTATCTTGCCATGTCATATGACCTACGTTGCTCATGATGACTGCGTCAATGGTATTAGCCTGCACCCAAGATTACCTTTCCTGGCCACAACGTCTGGACAACGAAAGTTTGTCCAACAGGACGAGTGtgaaaataatgataatgaagAAATAAAGAATGATAACTCACTGAGACTTTGGAAACTTGGTTGTGGAGCTGAAGAAACAAAAATGCAGGATCAAGTATACTCTGAGAAATCTCAGAGCTTTGATAAGGATAAAGGTCTTGGTCAAGTACCTAATGAAGTCTACTTCCTCAAAAAGATGAAGGATAATGCCAATGTTATTCAGTTTTTACATTATGAACAAATTTCTCCAGATCAATTTGTAATTGTCTTCGAAAGGCCTGTTAATTGCGGAGATCTTCTTGACCTTCGATACGATAAAGGAGGATTTTTTACTGAATACGAGACAAAAAAATACATTAAGTCGTTGGTCGATGTCGTCCAAGCGATGGAGAAAAAGAACATTATTCATCGTGATCTTAAATTAGAGAATATTCTGTACGACTTTGACGACATCAAGTTAATTGATTTTGGACTGGCGAAAAGTCATAAACCTGGCGAAATATATGACAGATTTGCTGGTAGTGAAACAAATGTGCCACCTGAATTCATTACAAATAGACGATATGAACCGAGCAATGAAGCTGTACGATCTATTGGCGTCGTAATCTATGAGATGATCTATGGTCGACGACCttatagagattataaaaattATTCAGATGTAATAGCAGGATTACCAAACCTTGACAATATCTCTGAAgAATTAAAAGATCTTCTTGCCCAGTTATTCTCCATGGATCCCAAGAAGCGACCAGGAATTAAGGAAGTCGCAAAACATTCATGGTTGCGAGTTAAGCGTTCGGTGAGTGAACGACTTCCCTCGTTTCTTCGTCGGGTTTTTCAAAAACGTCGTGGTTCATACAACGTCACACCCTCTGTCATCTAA

Transcript

BRAKERXEIT00000039416

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VC51	Telomerase Cajal body protein 1 OS=Mus musculus OX=10090 GN=Wrap53 PE=1 SV=1
Q5XII5	Telomerase Cajal body protein 1 OS=Rattus norvegicus OX=10116 GN=Wrap53 PE=1 SV=1
Q60525	Telomerase Cajal body protein 1 OS=Mesocricetus auratus OX=10036 GN=Wrap53 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004336 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR051150 all species →	Family	SWT21/TCAB1 mRNA Splicing and Telomere Maintenance	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13211 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0015030 all species →	Cellular Component	Cajal body	Interproscan
GO:0030576 all species →	Biological Process	Cajal body organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERXEIP00000039416.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.