Gene detail

Detailed information of BRAKERXEIP00000039524.1 in Muricea muricata

Genomic Location: not available for this species
NR annotation: XP_028405742.1, E3 ubiquitin-protein ligase HERC2-like [Dendronephthya gigantea]
Species Muricea muricata · all data for this species · gene families

Sequence

CDS

BRAKERXEIT00000039524

atgcttgtttatcTTTTGCAGCTTGATCGAGATGGTTTAGATGATTTAAATGTGCAAGTAAACTGGCAAAGAAAGGGAGGAACATACTGGGTTAGATATGTCCATGTCGAGTTACTCGGATTTGATACAGCTGCTAAAGGTGGCCGTCCCTTCAAAGTTGGAGATCGTGTAAGGGTCAAAGTATCTGTTACAACACCAAAATACAAGTGGGGAACAGTGAATCACGCTAGTATTGGTAGTGTTGTATCAGTCAGCAGTAATGGCAAAGATATTAAAGTGGACTTTGAACAACAAGCAAATTGGACTGGGCTTGAAAGTGAGATGGAACTTGTACCTGTCAGACATAATGGCGTAACTTGTTTTTCATGTCATATGCATCCTGTGGAAGGACCGCGGTATAAATGCAAAGTTTGTTCTGATTACGACctgtgtcaaaattgttttgaaacTCGCTCGCACAAGCATTCTTTCCTGTGTTTGGCGGAGGAAGACAGCGCTCCAGTTAATGTCGGAAAGGCAGGTCGGGTGAGAAAAAGAGAAAAACGTGTACGTCGTACTGAACTGATCAAAGACTGGTCACGTTGTGTTAAACAAATCACAGTATCATCTCGCGAAGGTCTTAAGTTACGGTTGTTTGATGGAACTGACTCTTATTGGCAAAGTTCTGGACCTCAGGGAAAGCATTGGATAAATCTTGAGCTATATCCTGATATTCTGATTCATAAACTAACGATGACAGTTGATCCATCAGATAGTAGTTATACACCATCTTTAGTGGTGACATCAGTTGGAGAGTCATTAGAATCATTGGTTGAAGTAAAGAGTACACATGTTAAAGAAAACGAACATACAGTCAAGTTGCTTGAAAACGTGCAAGAGGAATGTCGTTTTGTCCAGATATCAATCAAGCAATGCCGCAGCAGTGGAATTGACACGAAAGTTCATGGTTTGACAATAATTGGAAAACGTAAATCTGATGAGGATCAGATCGCGTGTGGCTTCTCCTTCCTTGCTTTAGACGAGCAGTCAGAACAAGTGACATGCGCATTATCACCAAGAAAAACACAGCGTTTCTGCCAGGAGTCGAACGATGGAAAAGTGCAAGTTTATGTTTGGGGTCTTAACGATAAAGATCAACTTGGTGGTCAGAAAGGCTCAAAAATCAAAACGCCTGTGTTATCGGAAACACTAACCGATTTAAATGTAGTTCAATTGAGTGGTGGCTCTAAAAGTTTGTTTGCTGTAACTCGATCAGGAGAGATCTATGCCTGTGGAGAATCAACGAATGGTCGTCTGGGTATTGGTTCTGTTACTGGTAATGTTCCCACACTACGACTGATTGACAGTCTGTCTGGTATCCATGTGAAGAAACTGGCTGTACACTCAGGTGGTCGCCACTGTTTGGCTGTCACCACCTTGGGAAAACTGTATTCTTGGGGCGAAGGTGAAGATGGTAAACTTGGTCATGGAAATAAACAAAATTATGATAAACCCAAGGTTGTTGAAGCCTTCAATACAGCATTTATTCGCGACGTATCAGCAGGCAGTTCACATAGTGCGGCAATTACGAGTGATGGTGAATTATATACATGGGGGTTAGGAGAATATGGTCGGTTAGGTCATGGTGATGCTAATACTGTGAATAAACCAAAGCTGGTGCGAGCATTCCAAGGTCATCATGTAGTGAGTGTTGCATGTGGCAGTCGTGATGCTCAGACCCTGGCATTAACTGATGATGGTAATGTGTGGTCCTGGGGAGATGGAGACTTTGGTAAACTGGGGCGTGGTGGTAGTGAAGGTTGTCAAGTTCCTCAGCCTGTCGAAAAATTGAAAGGTGAAGGAGTTATCAAAGTCGAATGTGGTGCTCAGTTTTCACTCGCTTTAACTAGATCTGGTTTAGTTTATACATGGGGCAAAGGTGATTACTACAGACTTGGTCATGGTAATGATTCTCATGTCCGCCGCCCACAAGTGGTAGAGGTTTTCAGAGGAAAGAAGATCATTGATGTTGCTGTTGGAGCTTTACATTGTCTCGCAGTCACTGAACAAGGACAGGTTTATGCATGGGGTGATAATGATCACGGACAACAGGGAAATGGATCGACTTCTGTTAACCGTCGTCCTCATATTGTCATTGGTTTAGAAGAAGTGAAGATTACTAGAGTTGCTTGTGGTTCCTCGCACAGTATTGCATGGTGTGACATTAACACCCACACTCCAGTAAACCATGAACCAGTTCCTTACCCTATTAGCGAAGATCGACTGGGTTCTCATTTTGTTGCAGCGAGATCTTCTAGTGAACCGAAAGTAAGCAGTGGTAAATCTCGAAAGCAACGACCATCACTCACTAAAATTGTTTTGGCGTTAAGAGAGAAGCGCGAAAGACAACAAGCGTTTGGACACATTTTATCTGCTCTTCAAATCCACTTCGCACGCGAGGCAGTTGTGAGTTCATTGTCACGCACGTCCTCTCCGTCAGAGATGAATGCTGAAAGTTCCGAATCCTCGAACTCTGACACGCGAGTCAGTCCTTCGACCAAGTCCATTGATTTATCCGTGATACCCCAGGCCACGTTGAGTGAAGTTGTTCTCAGTAATGTTCCATCTGATGTTAGTTTAGATGAACTGTCCAAGCAGCTAGGTATTAAAGATGCTGAGCTATTGGTTGACGTTCTTAAATTAGCTGTTGCACATAGAACGAGCGAAGAAGGAAAGCAGTCTGTTTCAACAGTATTAAAAGAACTCGCTGAAGAAATCCCTGAGGTATGTGCAGATTTATATGGTGGCCGAAATGGCTGGTCAAATTGTAATGATACATCACGAATAAAAAAGGCAGGGGCGTAA

Transcript

BRAKERXEIT00000039524

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95714	E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens OX=9606 GN=HERC2 PE=1 SV=2
Q4U2R1	E3 ubiquitin-protein ligase HERC2 OS=Mus musculus OX=10090 GN=Herc2 PE=1 SV=3
Q9VR91	Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster OX=7227 GN=HERC2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002667 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00569 all species →	ZZ	Zinc finger, ZZ type	Domain	Interproscan
PF11515 all species →	Cul7	Mouse development and cellular proliferation protein Cullin-7	Family	Interproscan
PF00415 all species →	RCC1	Regulator of chromosome condensation (RCC1) repeat	Repeat	Interproscan
PF03256 all species →	ANAPC10	Anaphase-promoting complex, subunit 10 (APC10)	Family	Interproscan
PF18346 all species →	SH3_15	Mind bomb SH3 repeat domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000433 all species →	Domain	Zinc finger, ZZ-type	Interproscan
IPR009091 all species →	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan
IPR000408 all species →	Repeat	Regulator of chromosome condensation, RCC1	Interproscan
IPR043145 all species →	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan
IPR004939 all species →	Domain	APC10/DOC domain	Interproscan
IPR051210 all species →	Family	Ubiquitin ligases and GEF domain-containing protein	Interproscan
IPR021097 all species →	Domain	CPH domain	Interproscan
IPR014722 all species →	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR040847 all species →	Domain	Mind bomb, SH3 repeat domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22870 all species →	REGULATOR OF CHROMOSOME CONDENSATION	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERXEIP00000039524.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.