Gene detail

Detailed information of BRAKERXEIP00000039938.1 in Muricea muricata

Genomic Location: :...
NR annotation: CAB3979442.1, transcription initiation factor TFIID subunit 1 isoform X2 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERXEIT00000039938

ATGGCTTCCTGTTTTACAGAAAAGGCTGGGAAGGAAGGTAGAAACGGAGATGATGACGATGCAACATCCGTGATGAGTTTTGAATCATCTGTGGCTGGACGTCGTCTTTTAATCCAACGAACATTTAAAGATGAAGAAGGAAGACAATACACACGGACAGAAGTTGTTAAAAATCAACCTGTCATTGACGCATATCTCAAATATATCACTAAAGATAAAAACTACAGGGAAAACTTTGCCAGCCAAGATGAAGTTCACAAAGAAGAAATTCGACGAGAGAGACGAAGAATCCAAGAACAACTACGAAGAATTAAACGTAACCAGGAGAAAGAAAGAGAAAAAGCTCTTCAaccaaagaaaaagaaagaaaaagctCCAAATAATCTCAAATGTGGTGCTTGTGGTGCAATTGGTCACATGAGAACCAATAAGAACTGTCCGCTGTACCAGGAAGCTGTGGGCACAACAGGCCCAATCCAGGTCGCAATGACAGATGAACAAGTTGCTGAGCATGAAATGAACATGCCTCAGGATGATTTGGTTAAAGTTGAAGGAACAAAAATTACCTTAGGAAAAGCTTTTCTTGATCATGCCAACGATCTGAAACGTAAATCCATGGTTTTACGATTCCCCAAAGAGTTGGTGGAGAAGAAACGCAGACGATCTGGTGTAATGCATTGTGACTACTTAATGAAACGACATAAACAGACTAACAGAAGAAGGACAAACCCTGTGGTTGTTCTGCAACTCATACTGGAAAATATTTCTACGAAAATGAAAGAAATTAAAGAGAGTCGTCCTTTTCACGCTCCTGTCTCGGCTCGTACTGTGCCAGATTACTACAAGATTGTCAAGAATCCTATGGATTTGCAAACTGTTAAGGAGAATATCCGTAAAGGGCTTTATCGTTCTCGTGAAGAATTCCTACAAGATACGAATCTTCTGTACTCAAATTGCGTTTTATATAATGGAGATAAACATCCATTGACTGAAGTTGCAAAGAAAATCACTGATCTGGCGAAGAAAATGATTGATGAGaaagagaaagaaattacacaaattgaAAAAGATATCAATCCGCTACTAAGTGACGACCCTCAGACGGGACTTTCATggatgttggaaaatgttattatgcaTATCAAAGCTTCTGCAGATACGTGGCCGTTTCATCGTCCAGTTAATGCCAAGAATGTTCCAGATTATTACGAGATCGTTGAACAACCAATGGATTTAGAAAAACTACGTAATAGAGTTCTGGATCATTTTTATCGAAATAGAGAAGAGTTTATGGTCGATGTGAATCTTATTTTAAACAACTGCATTTTATACAATGGAGAAGAACATCCGTTTTCTTTAACATGTAACAGTATGGTGAAGAAGTGCGAGGAGTTGTTAAAAGAGAGTGCAGATCAATTTACAAAACTGGAAGAAAACATTGCATCAAATCCATTCTATGATGAAATAGACAGTGAGAGTAGATCGTCTTACGTGACAAGTCAACCTCCTTCAGAGAGTGGAGAAATGTTTAATGAGAACAGTTTAGATGAATTTCCAAGCAGTTTACACAACGAAGAAACAATGGATAGCGTATATAGAAATGATGATATCAGTAACCAGAGTTGTGATAAAGTATTTAGTGCAGAGAAATCAGAAAGAGTTCACTTAAAGTCTGCCGATGATGATATGGACGTTGATGTCGTGGGGTCAGGGGAAGAGTCATTAAATCAAAGTAACTTAACTAATGATGATAAAGATGCTCCTGTTGTTGGTGAAAACAGTTTAACATTAGAGAAATTACTTCAAGACCTTGAAACATCACCTCAACATGACGAGAGTGATGAAAGCGGCGATGATGACTTTCCATTTGATGATGGGGATGATGATGACGTAGAAGACGACGAAGATCCTGGGGACGAGGAAAGACAGGACGAGATTATTGAGGATGTCGAGTATAATGAAGATGATACATCTAGGGATACAACGGAATAA

Transcript

BRAKERXEIT00000039938

Protein

Uniprot

Uniprot term	Description
Q80UV9	Transcription initiation factor TFIID subunit 1 OS=Mus musculus OX=10090 GN=Taf1 PE=1 SV=2
Q60544	Transcription initiation factor TFIID subunit 1 OS=Mesocricetus auratus OX=10036 GN=TAF1 PE=2 SV=1
P21675	Transcription initiation factor TFIID subunit 1 OS=Homo sapiens OX=9606 GN=TAF1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15288	zf-CCHC_6	Zinc knuckle	Domain	Interproscan
PF00439	Bromodomain	Bromodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001487	Domain	Bromodomain	Interproscan
IPR041670	Domain	Zinc knuckle	Interproscan
IPR036427	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR040240	Family	Transcription initiation factor TFIID subunit 1	Interproscan
IPR018359	Conserved_site	Bromodomain, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13900	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004402	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006366	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0017025	Molecular Function	TBP-class protein binding	Interproscan
GO:0051123	Biological Process	RNA polymerase II preinitiation complex assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04683	TFDP1; transcription factor Dp-1	-	Chromosome and associated proteins	ko03036	deepkoala