Gene detail

Detailed information of BRAKERXEIP00000040172.1 in Muricea muricata

Genomic Location: chr3:59888683...59899451
NR annotation: CAB4009022.1, C-Jun-amino-terminal kinase-interacting 3 [Paramuricea clavata]
Species Muricea muricata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERXEIT00000040172

ATGGTTCATCATTTCATGGAACGAATGGAGAGAAGTGATCGAGGTGGTCGATTAATAGCAGTAACTCCGACTGGGACATTAGAGAGACCAAAACAAAAGAAATCAGGAATGCGTCAAGAAAATGGTGTTATGCCAGGCTTGTATAGCTCAATATCACAACCAAATCTTGCCACTGCTGTCAGTCCAACTCCTCAAACACCAAATGGAAATACTGATTTAAACCTTGAGCAAAGTTTTGATCAGAATAATGATCTTTCCTTCGAAGATGAGTCTGTTGTAAAGGTTGAAGCTGAAGGTAGCAAGGTGGTGCCAGTGAATGTTGTGGAAGGAGATTCAGTAAGTCCTAAAGCTGCCAATGCTGTTCCATTTGCTGATGAAGTACAAGAACTAGCACAACAACAGCCAGCAGTTGCAATAATTAAGGAAAACGAACAAAGTCCTATTGAAACAAGTTCCATGGTCAATGAACAAAGTGGCGAAATAAAACCAGAACTGAATACCAGTGGAGTAAGCTCGCAGACAAGCAGTGACTCGGCTGCTAGTAATGTAAAAACATGCAATATATCTGACATAAGCCACGTTCCTGTCGTAAGCGTACAAGATGTGCAAAATTTAATAATTAGTCCAAAAAGTAAATCTGAATCGGGTAGTGAGTCAATGATAAGTGAACTAAGTCCAGATGTTCTAGCCATTTTATCTTCGACGCCAGAACTAGAAATGTCTCTGACCCGCTCTGCAACTCGTAAAGCTAGGCTTAACAAAGGATCTAAAGATAATGTCAAGACTGCTCTCGAGTTCGATCCTGCTCAAGAATTTGTGAACACTAACTCGTTATTTGCGGAATTATCGTCTCAAGAACCGAGTGCAATTGGAGAAATTGATGAAGGAGCAGAAATATCAGTCATGGGAAAAGAACTAGAGTCtgtattgaaagaaaatgagGAACTTGTGAAAACAAAGAGTAAACTGCTGACTCAGAAGAATGACTTGTTAAAAAGAATTGAAGAGATAAGCAGTGaaaatgaaatattgaaagatgaAACGAAAATGTTGCAAGGAAAAATGGAGACACTGTCAACAAAAGGAGAAAGTTATGAACAGCAACAGCAAGAAATCAAAAGGTTAAAACATGAACTGGATAAATCAACTATGGCACTTAAGGAAGCAAATGTTTCAGCTGCACATCGCAAAAGATTCAGTCGTGTTGAAATGGCACGTGTGTTGATGGAGAGGAATCAATATAAAGAAAGACTGATGGAATTACAGGAAGCTGTGAGATGGACGGAAATGATAAGAGCTTCAAAAGAGAAAAGCCTTGAGTTGCAACAGAAAAAGAAGTCTTGGGTTTGGAAATTGTTTAGTGGCCTTTTCAATACGGCACCAAAGAAACCCAACCCAAGTCCTGTGACCTTAAAATACTCGGGACCTCAAGCTGGGGGAAGTGTGAGATCACCACCTGATTCCTCTGCGGAGACATCACCCGGAGTAGTTGACAGTCAAGTGGATCGACAACGACTTATGGAAAAGCGCACAAGGATGAAGCAACTGCGTGCTTCTGTTAGTTCAGGTATGTCTGAAGGTCGAATGCAAGCGTATGGCTGGAGCTTGCCAGCGCGATATTCAACTGAAGGAGCTAATGGAAGTAAAGGACTTGTATCAGTTCCTGTTCCAATATACTGCAGACCGCTGAACATCAATGAACCTGGCATGAAGATTTGGTGTGCTTGCGTAGTCGAGCGACGTTCAAAAGATGGCGGTTCTCTCGTAGGAGGTAGTGTATTCTACGCTGAAAGTTGTCGCGACTCGAGCTCTGCTAAAGATATTAATAATTCGTCTTTAGAAGAATCTTCACCAACCACTTTATGGATCGGCAGTAGTACCCATTCATGCAGTAAGATTGCGGTCATTGACGGAAATTCCCCTCAAAAAGTTCTGGAATGTTTTGTGTTATGCTCTTCTCATTTGTTGTGTATTGCTGCTATACCCGGTGTGAGTGAAGATGATTTTGATGACAGTACGAAGGAAAATGAAGAATCCTCTGAGATAGCGACTGATACTGCATCTGAAGTTGATGTGAAAGCCAGTCCTGGTGAAACTAAAAGATCAGTTGAAATATCTGATAGTTTTGATAGTTTTAACAAGACCAATGATTCCTTATCTACATCAGAGTTGATTGATCCCCTCGAGGTAAAACCAAAAGCTGTACATGGCGAGCAAACAATAAGCAATGGCGCCACTCAGGATGGCAATGCGAAGTCGACTGAAGGACCAATGGATAAAGTGAGCACAATGCTTCCAACAGTTTGGTTTGGTGCACAGTCAGGAAGCATCTACATTCATTCTGCAATTTGTGATTGGAAGAGATGTCTTCACTCAATCAAGTTGAGGGATTCAGTTCTTAGCATTGTACATGTGAGAGGAAAAGTTCTAATTGCTTTAGCTGATGGAACGGTTGCTATCTTTAGACGCAAACCAGatGGCCAGTGGGATGTGCGAAACTATCACTTATTAGACTTAGGGCGTCCCCATCATTCAATCCGTTGTATGACTGTAGTTCATGACAATGTTTGGTGTGGTTATCGAAATAAAATTCAAGTGATCAACCCGCAGATTATGAGGATTGTGaaatcttttGACGCTCATCCTCGGCGTGAGAGTCAAGTGCGACAGTTGTCCTGTATTGGCGATGGCGTGTGGGTTTCCATTCGTTTAGACAGTACATTAAGACTGTATAATGCTCATACGTATCATCACCTGCAAGATGTTGATATAGAACCTTGTGTTAGCAGCCTCATTGGAGCTGGAAAACTCGGGTTTTCGTTTGTTCGCATTACCGCGCTAATGTTAACCAAAGATCGTATGTGGGTTGGAACGGGGAATGGAGTGGTATTGTCCATACCTTTAGTTGCTGCTCAACCTGAATCATCAAGATCTGTTGTTACTACGCCGACGGATAATGGGGGACCTGGTGGAGTAGTTAGGGTCTACACAGATACAGTGGAAAAAGGAGCTGAAAAGCCTGGTGTCTCTCCTGGTGTTTCTAGCTTCATGCCATATTGCTCGATGGTAAATGCACACATTTCATTTCATGGTCATCGAGATTCTGTGAAATTCTTTGTCACAGTTCCCGGAAGCATGGATAAAACATCTTCACTTTCTTCGCCTAAACTTTCCTCTTCATCAAAAGCCGAGTCAACGTTATTTACATCCGGTATAGAGGAAGAAAGAAGTTGGCTGGTGGTCAGCGGTGGTGAGGGTTACATTGATTTCAGAACTGGTGATAACATTGAAGGAGGTGAGAACATTGGTGGACCTGAAGATATTTCTTCTAAAATGTCATCAGCTGAAAACAGTCATATTATGGTTTGGCAAGTCACGGGAGAGTGA

Transcript

BRAKERXEIT00000040172

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q58A65	C-Jun-amino-terminal kinase-interacting protein 4 OS=Mus musculus OX=10090 GN=Spag9 PE=1 SV=2
O60271	C-Jun-amino-terminal kinase-interacting protein 4 OS=Homo sapiens OX=9606 GN=SPAG9 PE=1 SV=4
Q9UPT6	C-Jun-amino-terminal kinase-interacting protein 3 OS=Homo sapiens OX=9606 GN=MAPK8IP3 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005017 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19056 all species →	WD40_2	WD40 repeated domain	Repeat	Interproscan
PF16471 all species →	JIP_LZII	JNK-interacting protein leucine zipper II	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039911 all species →	Family	JNK-interacting protein 3/4	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR034744 all species →	Domain	RH2 domain	Interproscan
IPR032486 all species →	Domain	JNK-interacting protein, leucine zipper II	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13886 all species →	JNK/SAPK-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005078 all species →	Molecular Function	MAP-kinase scaffold activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0019894 all species →	Molecular Function	kinesin binding	Interproscan
GO:0030159 all species →	Molecular Function	signaling receptor complex adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20317	SPAG9, JIP4; c-Jun-amino-terminal kinase-interacting protein 4	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Muricea muricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Muricea muricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →