Genomic Location: chr3:20206880...20207899
NR annotation: XP_028403755.1, uncharacterized protein LOC114526366 [Dendronephthya gigantea]
Species Muricea muricata · all data for this species · gene families
| CDS |
| BRAKERXEIT00000042558 |
| Transcript |
| BRAKERXEIT00000042558 |
| Protein |
| BRAKERXEIP00000042558.1 |
| UniProt accession | Description |
|---|---|
| A5FNG4 | UDP-N-acetylenolpyruvoylglucosamine reductase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / BCRC 14874 / CCUG 350202 / NBRC 14942 / NCIMB 11054 / UW101) OX=376686 GN=murB PE=3 SV=1 |
| B3ETU4 | UDP-N-acetylenolpyruvoylglucosamine reductase OS=Amoebophilus asiaticus (strain 5a2) OX=452471 GN=murB PE=3 SV=1 |
| Q5LBG5 | UDP-N-acetylenolpyruvoylglucosamine reductase OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / LMG 10263 / NCTC 9343 / Onslow / VPI 2553 / EN-2) OX=272559 GN=murB PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0019651 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01565 all species → | FAD_binding_4 | FAD binding domain | Domain | Interproscan |
| PF02873 all species → | MurB_C | UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003170 all species → | Family | UDP-N-acetylenolpyruvoylglucosamine reductase | Interproscan |
| IPR036635 all species → | Homologous_superfamily | UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily | Interproscan |
| IPR016167 all species → | Homologous_superfamily | FAD-binding, type PCMH, subdomain 1 | Interproscan |
| IPR036318 all species → | Homologous_superfamily | FAD-binding, type PCMH-like superfamily | Interproscan |
| IPR016169 all species → | Homologous_superfamily | FAD-binding, type PCMH, subdomain 2 | Interproscan |
| IPR006094 all species → | Domain | FAD linked oxidase, N-terminal | Interproscan |
| IPR011601 all species → | Domain | UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal | Interproscan |
| IPR016166 all species → | Domain | FAD-binding domain, PCMH-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21071 all species → | UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE REDUCTASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008762 all species → | Molecular Function | UDP-N-acetylmuramate dehydrogenase activity | Interproscan |
| GO:0050660 all species → | Molecular Function | flavin adenine dinucleotide binding | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0071555 all species → | Biological Process | cell wall organization | Interproscan |
| GO:0071949 all species → | Molecular Function | FAD binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00075 | murB; UDP-N-acetylmuramate dehydrogenase | EC:1.3.1.98 | Peptidoglycan biosynthesis and degradation proteins | ko01011 | deepkoala |
Genes whose expression across the transcriptome samples of Muricea muricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Muricea muricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
