Gene detail

Detailed information of BRAKERXEIP00000043347.1 in Muricea muricata

Genomic Location: not available for this species
NR annotation: XP_028405527.1, collagen alpha-5(IV) chain-like [Dendronephthya gigantea]
Species Muricea muricata · all data for this species · gene families

Sequence

CDS

BRAKERXEIT00000043347

ATGCCGGACTTTGGCTCTGGTATTACCACTCAGTATTCTACTGAAGTACCATCTACTACACCTCCTGCTCCAATTACACCACCTGCTCCACCTACTACTATACCACCTGCTTTAACTACAAATGAACCAGCACAAACACCAACAAATCCACAATCGACCAAAAGACAAAAGAGTGGAGGATGTGAATATGGAAATTGCCAGCCAAAAGGTGATTGTGATTGTCTCAAGGGTGCAAAAGGATCACGGGGACGGATCGGTTCAATGGGCGCGCAAGGAGTTCAAGGAAATCCTGGTTCTCCCGGTAAACAGGGCTTACCAGGACACAAAGGCATTAAGGGTGATGTGGGAAACCCTGGCGGTAGAGGAATGCCTGGTGATAAGGGTATGATGGGTATTGTTGGTTTTGATGGATATGGTGGTCTACCAgGTCTTCACGGTAATCGTGGTCCCAAAGGTCTTCCTGGAATCCCAGGTTGCAAAGGTGAAGCTGGTGAATCAAGCACATCCAAAGGCTCAGTTGGTTTTGAAGGACCACCAGGTCCTGATGGTGACCAAGGTCCAAAAGGTGAAAAGGGTGAACCCATATCTGGACCTACACCACAAAGGAAAGGCTCAACAGGAGACGTTGGTGAAGATGGTCAAAAAGGAATGCAGGGAAATCCCGGCAATCTCGGACCAAAAGGTGATCTGGTAGGTATTGTGGTTGAACATAACCGTTACGTGGGAGACAAAGGGATGGACGGAGAACAGGGTCTTGAAGGTAAAGAAGGTGACAAAGGCGACAGAGGCGATAATCCGATAAAAAAGATAGTAAATGCCGCTAAAGGAGAAAAGGGAGATCGCGGTAAAAAAGGCGAGAAAGGAAGGGCTAGAAAACTCAGTGTGGGCGAACAGGGGATGAAAGGTGATAAAGGAATAGGAGTACGAGGCGACAAGGGTGCACTTGGATCCAAAGGAGTCCAGGGTGAATCTGGTCTTGTAGGACCTCCAGGAGATTCGGGAGAAGTGGGTAAGAAAGGGGACAGAGGATTGATCGGTGCTCAGGGTTCACCTGGTATGGTTGGTACGAAAGGCGAAACTGGAATCAAAGGATTGCAGGGACCTTCAGGACAACCAGGTTCGCCTGGAAAACGTGGAGATGTCGGAGATAGACCTGAACTGAATTTCCCTGGTCGAAAAGGCGAAAAAGGTCAAAAGGGCAAGGTTGGACCTCCTGGAGACTTGGGAGGTCAGGGTGACGTGGGACCAAAAGGAGAGACAGGACCTCCTGGTAAACCAATGAGAGGATTCAAGGGTGCAACAGGTGAACGTGGTCCAGACGGTGGTCCAGGGGAATCTGGCAATCCAGGTATACCTGGTATGCAAGGCCCGAAAGGAGTAGCGGGAAGGAGTGGTGAAAAGGGGTTAAAAGGAGAAATGGGAGATATTGCTATTGGTATCCCCGGACCAAAGGGTATGGACGGTAAACCAGGACCTAAGGGTTATAAAGGAACTGTTGGTGATCCTGGTAATCAGGGAGAACAAGGTGCGCCTGGAAATCCATTTGACATTGACTGTGATGACCCTGCTAATGAGTGTCCAAAGGGAGTTAGAGGACCCACTGGGCCACGAGGTATAGCAGGTGATGTAGGTGAGGATGGCGCTCAAGGTCCTCGTGGTCCAAAAGGTGACAATGGGGGTTTATGTCCTATATGTCCACCTGGCCCTGCAGGTGCGAGAGGTGATAAGGGGTCTGATGGTGCACCTGGGCCAAAGGGTAATCGCGGTCCACCGGGAGGTGTAGGTGTTCCGGGAGTTGACGGTGATCCAGGTCTAGATGGACCTGTTGGAGAAAAGGGATTTAAGGGATATCGAGGCTACGCAGGTTCAAGCGGTGAGAAAGGCGACAAAGGAGATCCAGCACCTACAGATGTACGTGTCCCGCCAGGAGATCGCGGTGATAGTGGTGATCGGGGTGACAAGGGCTTGAAAGGCTTTAAAGGATTAGAAGGACGTAAGGGTGTTGATGGTGTGCCAGGGCTTCCTGGGCCGCGAGGTGACTCTGGTGAAAGAGGTGAGAGTGGTATTCCCGGAATTGATGGTGAGAAAGGAGACCCAGGTGATGTAGGAATCAAAGGGGAAAAAGGAGTATCAGATAAAGGCGATCGAGGTGCCCCTGGTGAAAAGGGTGACCCTGGCGCTATGGGTGACAGTGGAGAAGgACCTAAGGGTCCTAAAGGACTTAAAGGATTACCAGGACCTACGGGACCTAaaggaaaaaaaggaaaaactGGAGCTGAAGGGGAAATAGGTATGCTGGGAGATGAGGGTGAAGAGGGAGTAAAGGGCGCAAAGGGAAGAAGTGCAACTAAAGGACGTAGAGGTGATAATGGCACGGTTGGGGATACTGGGGTACCTGGAGAACCTGGCAAAGATATAAAGGGTAACAAAGGAACGCCTGGTGAAAGTGGATTCAACGGTGAAAAAGGTGTCAAAGGTGACATGGGTGATCCTGGAGTCGACTCTGATGAGTCTGGGACTGGTAATCTTGGTCAAAAGGGTGAAAGTGGAGATCCAGGATTGTCACCAATGGGTCCAGATGGTGAAAAAGGAAATCGAGGTGCACCAGGAAGAAATGCGTGTGGCGGTACTGTAGACGTTGCTTTCGTTGTTGATACATCTGGAAGTGTTAAGGAACATTTTGGCACCATCAAAAGCTTCGTAAAGAAATTTATCGATGGCTTTGATATTGCTGAGAATAAATCTCACGTGGCTATGGTAAGATTTTCGAACAATGCCGAAGTACAATTTGGGTTTGCTGATGAATATGACGCGGATACTTTGAAAGAATTCGTGGACATTGCCGAGCATGATGGTGGACAAACATATATTGACAAAGCATTTGATATAGCCAACACGCAAGTCTTTACTCGTAAGGACGGATGGAGACCTGATGTTTATTCAATACTGATGCTTTTAACAGATGGCAATCAAACAAAAGATGGACCTTACACTCCTTTGGCTCAAGCTTCACAACCTATAAAAAACAAAGGAATACGTATTGTGACGGTTGGCGTGGGAGACGTTGACTTAGAGCAAATGAAAATACTTTCTCCGGATGAAGCAGACCGCTTTAACCCAAAAAGTTTCGATGACTTATTGCCATTGGTTGAAACCATTTTTGAAACAGGCGGTTTATGTACAGGTGCTAAAGGTGAGAGAGGAGAGAAGGGACTTGACGGTTCACCTGGTAATCCTGGTCCTCCTGGAACTGCCGGAGATGTTGGAGATCCGGGACTACCGGGGCCAGATGGTAAcaatggtgatgatggtgatcCTGGCGAAGATGGAAAGAAAGGGCCGACTGGTGACCAGGGTCAGAAAGGAGACGCTGGACCCCCGCCTCTTAGGCCAGGACCTAAGGGCGACCCAGGCGATCCAGGCGAGTCTCCTCGTGGTCCAGAGGGCGACCGGGGAAGAAAGGGAGAACCTGGCTTACCCGGAATGAATGGTAACCAAGGTCCAGTTGGACCACCAGGGACAAATGGTGAACCTGGTGATAATGGACCAAATGGACCGGCTGGACCAAAAGGCGGCAACGGTATGGCTGGACCGGATGGTTTGCCTGGCCCTGACGGACAACGAGGACCCCAAGGGGAGCCGGGACAAATTGGACTTCCTGGAGAGCCAGGAGATCAGGGACCAGTAGGACCTCAAGGTTCTAAAGGCGTGATCGGTGAAGAAGGTTATGGTGAACCAGGTGATTCTGGTGACACCGGCATCAAGGGTGATAGAGGAGACCGAGGTGGTCTTGGAATTGCTGGAGACAAGGGCTTGAAAGGATTACAAGGTCGAGTGGGTGATCCTGGGGATAAAGGAGTCAAAgGATCTGTAGGAGAAAAGGGTATGAGAGGATCACCAGGCGTTGTAGGCGTCGGTTTAAGAGGACCTAAGGGCAACAGTGGATCGAGAGGGGTAGCTGGTGATAAAGGGGCAAAAGGAGAACCTGGTGAAGATACGATTGGTGGACGAGGGATTAGAGGTGATAAAGGCTATCTAGGAGACCAAGGCCCCCCAGGTCCACCTGGAGCACCTGGATCTATCGGGGATAGTGGTGATTTGGGTGATGACGGACAGAAGGGTTTATCTGGTAACGCTGGTCCACCTGGAGAACAAGGTGAACCTGGTGGTGGTGGACTGAGTGCAGAAAATGAAGGAGAAGCTGGTGAACCCGGTGATCCTGGCCCACCGGGAAATGTCGGACCACCGGGACTGCTTGGCGACACGGGACCCCcagGTAGTCCTGGTCCAGAGGGCGAACATAGTATTGTAGTAGGTCAAAAAGGTGAAAAAGGTAATAGTGGACCTCGTGGAACAGATGGGACTGACGGTGAACAAGGTCCTCCTGGACCTCCTGGGGATGTTGGAGCTAAAGGTGATAATGGTCCCGCTGGTGATACTGGAGAACCAGGTATACGTGGTAATCCTGGAAATCCTGGACCACGTGGTGACAATGGTGATGAAGGACCAAAAGGATATAGAGGTAGGAAAGGTGATGCTGGTGAACCGGGTGATAAAGGTAATGATGGTGATACTGGTGAATCAGTGGATATAGTGGGTTCTGGGGGACCGAAGGGAAAATCAGGTGAACGAGGAACAAAAGGAAATAGAGGTGCAGATGGCAATCCCGGTGCACAAGGTCGCGAGGGTACACCTGGAAGGGACGGAGCTAAAGGTGTCCGAGGAAGAGACGGAGTACCTGGACCTCAAGGACTCCGAGGTGAAAAAGGTGATGAAGGTCAGAAAGGTCCAAGAGGTCGCCAGGGTGAACGTGGACCTGATGGTATTGTTGGAGACCCTGGTCCTCCTGCCAGCGCCTCAGGGTTCTATGTTACTCGGCATAGTCAAGATCAAACTCCACCATCATGCCCATTTGGCTACAAGAAAATGTGGGACGGTTACAGTTTGTTATATGTCCAAGGAAATGATAAATCTCATGGTCAAGATCTTGGTCAAGCTGGTTCATGTCTTCGTCAGTTCTCGACAATGCCTTATTTATTCTGTAATATATTCCAACGATGTAATCTTGCGTCGAGAAACGACTACAGTTATTGGTTGTCATCGTCCGAAAGAATACCTATGATGCCTGTTGATAATGATGCTGTAGAGCCACATATTAGTCGTTGTTCAGTGTGTGAGACACCTGGACCTGTCATAGCTGTGCACAGTCAAGACCAAACAATACCATCGTGTCCTGATGGATGGCAGGGATTATGGGATGGATACAGTTTCATTATGCATACAGGTGCAGGAGGGAGTGGAAGCGGTCAGAGTTTGTCTTCACCAGGCTCATGTCTTAAAGAATTCCGTCCAAATCCATTTATCGAATGTCATGGTCGCGGGACATGTCATTATTTCGCCAATAAGTACAGCTTCTGGATGGCAACTGTAAAAACTGGCGAAATGTTTAAATCGCAAGCTCCTGAAGTTTTATCTGCGGCCAAAGGACAAGACTTAAGATTGCGCGTTAGTCGATGTCGTGTTTGTGTTCGACCTCCTAAGACAAACCGTCAGCAACCACACCCAGCTTTCTGGCATGATGTCACTGACCCCAAGACGAAGACACAAGGTGCTGCCAATGCTAAACCGTTATTGAGACACGGTGGAATGGAGTAA

Transcript

BRAKERXEIT00000043347

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P02463	Collagen alpha-1(IV) chain OS=Mus musculus OX=10090 GN=Col4a1 PE=1 SV=4
Q7SIB3	Collagen alpha-2(IV) chain (Fragment) OS=Bos taurus OX=9913 GN=COL4A2 PE=1 SV=1
Q7SIB2	Collagen alpha-1(IV) chain OS=Bos taurus OX=9913 GN=COL4A1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001899 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01413 all species →	C4	C-terminal tandem repeated domain in type 4 procollagen	Domain	Interproscan
PF00092 all species →	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF01391 all species →	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001442 all species →	Domain	Collagen IV, non-collagenous	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR008160 all species →	Repeat	Collagen triple helix repeat	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR050149 all species →	Family	Collagen superfamily	Interproscan
IPR036954 all species →	Homologous_superfamily	Collagen IV, non-collagenous domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24023 all species →	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005201 all species →	Molecular Function	extracellular matrix structural constituent	Interproscan
GO:0005581 all species →	Cellular Component	collagen trimer	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0030020 all species →	Molecular Function	extracellular matrix structural constituent conferring tensile strength	Interproscan
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERXEIP00000043347.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.