Detailed information of BRAKERXEIP00000044109.1 in Muricea muricata

Genomic Location: chr3:58625482...58628627
NR annotation: CAB4004416.1, Hypothetical predicted protein [Paramuricea clavata]
Species Muricea muricata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q80UU2Ribonuclease P protein subunit p38 OS=Mus musculus OX=10090 GN=Rpp38 PE=1 SV=1
P78345Ribonuclease P protein subunit p38 OS=Homo sapiens OX=9606 GN=RPP38 PE=1 SV=2
Q32LC1Ribonuclease P protein subunit p38 OS=Bos taurus OX=9913 GN=RPP38 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007766 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01248
all species →		Ribosomal_L7AeRibosomal protein L7Ae/L30e/S12e/Gadd45 familyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029064
all species →		Homologous_superfamilyRibosomal protein eL30-like superfamilyInterproscan
IPR042848
all species →		FamilyRibonuclease P protein subunit Rpp38Interproscan
IPR004038
all species →		DomainRibosomal protein eL8/eL30/eS12/Gadd45Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46948
all species →		RIBONUCLEASE P PROTEIN SUBUNIT P38Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000172
all species →		Cellular Componentribonuclease MRP complexInterproscan
GO:0001650
all species →		Cellular Componentfibrillar centerInterproscan
GO:0001682
all species →		Biological ProcesstRNA 5'-leader removalInterproscan
GO:0004526
all species →		Molecular Functionribonuclease P activityInterproscan
GO:0005655
all species →		Cellular Componentnucleolar ribonuclease P complexInterproscan
GO:0030681
all species →		Cellular Componentmultimeric ribonuclease P complexInterproscan
GO:0033204
all species →		Molecular Functionribonuclease P RNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K14523RPP38; ribonucleases P/MRP protein subunit RPP38EC:3.1.26.5
Mitochondrial biogenesisko03029deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Muricea muricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Muricea muricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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