Gene detail

Detailed information of BRAKERXEIP00000044133.1 in Muricea muricata

Genomic Location: not available for this species
NR annotation: XP_028403768.1, gem-associated protein 5-like [Dendronephthya gigantea]
Species Muricea muricata · all data for this species · gene families

Sequence

CDS

BRAKERXEIT00000044133

GTTAATCAGAAAGTTTGTACTAGTAGTTACCGCTGGTTAGCAGGTCACAGCGCTCGGGTGACCAGTGTCGTGTGGAGCCCGCATTCTGATTTAAAGCTTGCTTCTTCTTCGTATGATGGCACTGTACAGATATGGGATGTCATCAAAGGAGAACCGTTGGTGAATTACCGCGGTCACAGTGACCGTGTAATGACAGTGGCGTGGAGTTTAATCGATTCTGATGTATTGTTTAGTGGTAGTGGTGATTTTACTGTTCATTCTTGGAGAATATCAGAACAGATCTTCAAGGAGCCACCTCTAGAAGCAAGAAAACCTCCTAAATTCTCGAAATCAAAAAGTAAGAAGAAAAAGAATACGACTGACTGTAAAAAAGCTAAAGCTGAACACGTGGCAGTGAAGACCGCAGCTATGTTGGAAGAAAAACAGTCAGTAGGGAATGCAACAGCGTGTGATGAAAAAGGTCCTGTCAAGACTGATTTGAACTTGGAAAGTGTCCAGTTTGCACCTGGTCTTCCTGAAACTACTAGCTTACATTTTGACAATTCCCAGACCGATGGCAAAGAAGAGAATGTCAGTGTTGCAAAAGAACCATTAGCTGATGGCAAAGGAACCCAAGTTGGTACTAAGAAGAAGAAAAGGAAAGCAAAATCCATGTTTCCTCTATCAGCCTCAGCTGATAACAAAACAAGATGTCTTACTAGTCAAGAATGTGTCGACATCGCGAAATTATTAACAAACGCCACAGGTCGTCCTGAGAATGTTCTGTCTATCACTAGTGAAAACATTAATCTTGGTTTATTTGTAAACAGACACTCTGCATTCAGCATGCTTTCTGAAGAAGGACGTCACCATGCTGAAAGTGGAAACATAGATTATCAATTACAATTGGAAATATGGAAAGGAAATGTTGGAAAAGCATTAGAACTTGCGGTTGAGAGGAAGCAGCTGTCCGATTGGCTAGTTGCAGTCAGTCATTTAGCTGGAGAACAGGTTCGTTTGGCTGTCACAGAAGCATTTGCAGAGCAACTTGTCAGTCATGGAAGCTTTCACAGAGCTGCTTTATATTATTTGGCGTGTCATAAGGTGTATGAGGCCATCAATATGTTTAAAACAGCAGGGATGTACAGAGAAGCCATTTCTTTGGCTAAGGTGCGTCTTTTGCCCTCAGATCCTTTATTACTCGATCTTTATTCATCTTGGGGCAGACGCCTGGAAAGTGAATACTTATTTGAACAAGCGTCAAAGTGTTATTTAGCATGCTGCTTGCATGATGACGCCATACGTGTTCTTACTCGACGTGGTGATGAAATGGCTTTACATAGTGCTGCACAGGTTGCTAAATTATGCGGGAAAGTAGACCTCTCTCAGTCATTAATACTACAATGTGCTTTAATGGCCACGAAAACAGCAAGATGGAATGACGCATTGGAAATGGTTCACGGTTACTCTGATATGCAGccATTCTTAATGCTGATGACCGTACATAAAACTACACTTGCCAGTTTGCTGAAATCTGAAGCTATTACCTCTGACGACGTTCCAGAAATGCAAGTCTCTGACGTCGTTCCAAACAGTAACGTACCATCACATTTACCGAAATTGGTATTAAAGTTAAAAGCCCAATATGAAAGGCTATCAATTGATTCTGCGTCTTTCTGGACATCTCCATCTTCTACAATTACTGGTTCGCATTGTGTGTGTGAAATTCTGGAAAGATGGTGGTCAGATTGTGGTCTTTGCGTACCTGAAACAAGGTTGGCTGGTCTTTATGTTCAGATATCAATGTTGGATTGTggtcaaaatttctcaaacaaGGAAGATACTGTAAATGTGTTGATGCTTGTTGCAAAAAACATTTGCCTTGGCTTGGTGGCTGCTGTGCTTGCCAAACCTGATATTTGTGTTGATCATTTCATAAAAGCTATTACTGATGTCCACGACTCTGGATATTTCAAACTTGTTTGTCATCTTGTCAGGCTTTTGTTTCCGTTTGGCCTGGAATCATGGCATACGATACAAAGTTTGTCAGAAGTGGACAAAAAAGAGACTTCGAGTATGGGTGATCAATGTTTTTCCAATATAATGGCTTTCTACTATAGAGCTATGCTGACTAAATATTTGTCTGATGAAAAACGAAGAACAACACATGATTTTGAAGGATCAGAACAAAACTGTGTCACTAAAAATACCGGTGAATGCTCAGCCGCAAATACAATAGAACATAACAATGAAATAGTAAATACAGATGGTACCTTTACCTCATGCAATGAAGAAACAAATCCAACATATGTACAACATAGTAGAAGTGTGATTGTTCAGACAGAATCTGAACTAGATTCTGGTGTCAGCAGGCTTCACGAAGGAGAAATGAAAGAAACTTCTTTCATAGATCTTTATCGAATTGGCTTGGTTTGCTCTACAGTTCTTTTGTCGGACATTTACGCTAAGTTTCAGAAACACAAGAATGATATTGAAAAAGATGTCCCAAACGAACATTTAAAGGATAGAGAAGATTCTGGACCAAAAACTGAAATTGAAATCTCATTATCGCGGTTCCACATAGCATTCTCACATCTTTTGAGGTTCTTCGCTGTTTTCCTTAATGGTACGGTGTCTTCTCGTTGTGGTTCCAGTTCTCGTAGCAGCCTGGACTGGGGGCGCGTCATATTTTCAGGCGTTGTTAAAGGCATCTGA

Transcript

BRAKERXEIT00000044133

ATGTTAATCAGAAAGTTTGTACTAGTAGTTACCGCTGGTTAGCAGGTCACAGCGCTCGGGTGACCAGTGTCGTGTGGAGCCCGCATTCTGATTTAAAGCTTGCTTCTTCTTCGTATGATGGCACTGTACAGATATGGGATGTCATCAAAGGAGAACCGTTGGTGAATTACCGCGGTCACAGTGACCGTGTAATGACAGTGGCGTGGAGTTTAATCGATTCTGATGTATTGTTTAGTGGTAGTGGTGATTTTACTGTTCATTCTTGGAGAATATCAGAACAGATCTTCAAGGAGCCACCTCTAGAAGCAAGAAAACCTCCTAAATTCTCGAAATCAAAAAGTAAGAAGAAAAAGAATACGACTGACTGTAAAAAAGCTAAAGCTGAACACGTGGCAGTGAAGACCGCAGCTATGTTGGAAGAAAAACAGTCAGTAGGGAATGCAACAGCGTGTGATGAAAAAGGTCCTGTCAAGACTGATTTGAACTTGGAAAGTGTCCAGTTTGCACCTGGTCTTCCTGAAACTACTAGCTTACATTTTGACAATTCCCAGACCGATGGCAAAGAAGAGAATGTCAGTGTTGCAAAAGAACCATTAGCTGATGGCAAAGGAACCCAAGTTGGTACTAAGAAGAAGAAAAGGAAAGCAAAATCCATGTTTCCTCTATCAGCCTCAGCTGATAACAAAACAAGATGTCTTACTAGTCAAGAATGTGTCGACATCGCGAAATTATTAACAAACGCCACAGGTCGTCCTGAGAATGTTCTGTCTATCACTAGTGAAAACATTAATCTTGGTTTATTTGTAAACAGACACTCTGCATTCAGCATGCTTTCTGAAGAAGGACGTCACCATGCTGAAAGTGGAAACATAGATTATCAATTACAATTGGAAATATGGAAAGGAAATGTTGGAAAAGCATTAGAACTTGCGGTTGAGAGGAAGCAGCTGTCCGATTGGCTAGTTGCAGTCAGTCATTTAGCTGGAGAACAGGTTCGTTTGGCTGTCACAGAAGCATTTGCAGAGCAACTTGTCAGTCATGGAAGCTTTCACAGAGCTGCTTTATATTATTTGGCGTGTCATAAGGTGTATGAGGCCATCAATATGTTTAAAACAGCAGGGATGTACAGAGAAGCCATTTCTTTGGCTAAGGTGCGTCTTTTGCCCTCAGATCCTTTATTACTCGATCTTTATTCATCTTGGGGCAGACGCCTGGAAAGTGAATACTTATTTGAACAAGCGTCAAAGTGTTATTTAGCATGCTGCTTGCATGATGACGCCATACGTGTTCTTACTCGACGTGGTGATGAAATGGCTTTACATAGTGCTGCACAGGTTGCTAAATTATGCGGGAAAGTAGACCTCTCTCAGTCATTAATACTACAATGTGCTTTAATGGCCACGAAAACAGCAAGATGGAATGACGCATTGGAAATGGTTCACGGTTACTCTGATATGCAGccATTCTTAATGCTGATGACCGTACATAAAACTACACTTGCCAGTTTGCTGAAATCTGAAGCTATTACCTCTGACGACGTTCCAGAAATGCAAGTCTCTGACGTCGTTCCAAACAGTAACGTACCATCACATTTACCGAAATTGGTATTAAAGTTAAAAGCCCAATATGAAAGGCTATCAATTGATTCTGCGTCTTTCTGGACATCTCCATCTTCTACAATTACTGGTTCGCATTGTGTGTGTGAAATTCTGGAAAGATGGTGGTCAGATTGTGGTCTTTGCGTACCTGAAACAAGGTTGGCTGGTCTTTATGTTCAGATATCAATGTTGGATTGTggtcaaaatttctcaaacaaGGAAGATACTGTAAATGTGTTGATGCTTGTTGCAAAAAACATTTGCCTTGGCTTGGTGGCTGCTGTGCTTGCCAAACCTGATATTTGTGTTGATCATTTCATAAAAGCTATTACTGATGTCCACGACTCTGGATATTTCAAACTTGTTTGTCATCTTGTCAGGCTTTTGTTTCCGTTTGGCCTGGAATCATGGCATACGATACAAAGTTTGTCAGAAGTGGACAAAAAAGAGACTTCGAGTATGGGTGATCAATGTTTTTCCAATATAATGGCTTTCTACTATAGAGCTATGCTGACTAAATATTTGTCTGATGAAAAACGAAGAACAACACATGATTTTGAAGGATCAGAACAAAACTGTGTCACTAAAAATACCGGTGAATGCTCAGCCGCAAATACAATAGAACATAACAATGAAATAGTAAATACAGATGGTACCTTTACCTCATGCAATGAAGAAACAAATCCAACATATGTACAACATAGTAGAAGTGTGATTGTTCAGACAGAATCTGAACTAGATTCTGGTGTCAGCAGGCTTCACGAAGGAGAAATGAAAGAAACTTCTTTCATAGATCTTTATCGAATTGGCTTGGTTTGCTCTACAGTTCTTTTGTCGGACATTTACGCTAAGTTTCAGAAACACAAGAATGATATTGAAAAAGATGTCCCAAACGAACATTTAAAGGATAGAGAAGATTCTGGACCAAAAACTGAAATTGAAATCTCATTATCGCGGTTCCACATAGCATTCTCACATCTTTTGAGGTTCTTCGCTGTTTTCCTTAATGGTACGGTGTCTTCTCGTTGTGGTTCCAGTTCTCGTAGCAGCCTGGACTGGGGGCGCGTCATATTTTCAGGCGTTGTTAAAGGCATCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BX17	Gem-associated protein 5 OS=Mus musculus OX=10090 GN=Gemin5 PE=1 SV=2
Q8TEQ6	Gem-associated protein 5 OS=Homo sapiens OX=9606 GN=GEMIN5 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003885 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR052640 all species →	Family	WD repeat domain-containing protein Gemin-5	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46362 all species →	GEM-ASSOCIATED PROTEIN 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000387 all species →	Biological Process	spliceosomal snRNP assembly	Interproscan
GO:0003730 all species →	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0032797 all species →	Cellular Component	SMN complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERXEIP00000044133.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.