Gene detail

Detailed information of BRAKERXEIP00000044642.1 in Muricea muricata

Genomic Location: not available for this species
NR annotation: CAB3982077.1, tRNA 2-thiocytidine biosynthesis [Paramuricea clavata]
Species abbreviation MMURI · all data for this species · gene families

Sequence

CDS

BRAKERXEIT00000044642

ATGGCTGATGCAAGGAGTGAAGTTCATATTTGGGGCGAAAGGAAATTTTTTGACATTCCTGATACATCGATAAATTCAGCTGTTAAAAACAGACGAACAAGTGAAAGCAGTAGAAATCTATGTGAATACATAGAACAGAATTGTTTAGGCAAAGATTTTGAATTTACAGGACCGTTTGGAAAACGCAAAGTTGTCCACTGTGATTATGTGGCTTCTGGCAAATCTTTAAAGTTTCTTGAAGATTATATTACAAACAATGTTTTGAGATGTTATGGTAACACTCATACAACCACATCTGTTACATCTTTACAGACAACATTGTATCGTCATGAAGCAAGGACAATAATCCGAAATGCAGTGAATGCCAGTGAACACGATGCTGTAATATTTACTGGATCAGGATGTACTGCAGCTGTGCATAAATTTATTTATGCTCTCAGATTAAACACATCACCTATCGTCTTTGTTGGCCCATTTGAGCATCATTCAAATATTTTGCCTTGGAAAGAAATTGGGAGTAAGATTGTGTGGATATCTGAAACAAAAGACGGGGATGTTGATATTGACCATCTTGAAGAAATGTTAAAGTTATATTCAAATAGTGAACAACAATTAATTGGTTGTTTCTCGGCCGCTTCCAACATTACTGGTATTTTAACAGACACCGACAAATTGTCTGCTTGTTTGCATCGTTATGGCGCTCTAGCTGTCTGGGATTATGCAACTGCTGGACCGTATACTgaaattaatatgaatccagtGGTGATTAGTGAAGACCAAAGCCTCGTGTACAAAGATGCTGTTTTTTTGTCTCCGCATAAATTTGTTGGTGGTGTAGAAACTCCAGGCATACTGATAGCAAAGaagaaactttttcaaaatacttCCCCATCCGGTTGTGGCGGTGGATCAGTGTTCTTTGTCACGCACAATTCTCATCGTTACTTGAAAGAAGTTGAAATGCGTGAAGAAGGTGGAACACCAGCTATTGTTGAATCGATTCGTGCGGGATTAGTTTTTCAGTTGAAAGAGGCTGTAGGTCATGAACATATTATGAAGATGGAAGATGAATTTCtaaaACTGGCCAGTGAAATATTCTCAAAGAGCAAGAATTTGATCGTTCTtggaaatttgaaaacatcacGTCTTCCTGTTTTCTCGTTTTTGATACAACATAAAGAAAGTGGTCTGTTTCTGCATCACAATTTTGTGTCATCTTTGTTGAATGATCTTTTTGGTATTCAATCTCGTGGAGGATGTGCGTGTGCTGGACCATATGCTCAGGATCTACTTGGTATTAATGACAAATTAGCCAACGAAATTGAATCTGCACTTCTGGAAGACAGTCGTTTGGACAGAGTGCATTTGAGGAGGTATCATGAATATTCTGAACGCGAATTGATCAGACCAGGCTTTACCAGAATAAATCTTCCATACTTTATGAAGAAAGAAGAAGCTTCATATATCTTAGAAAGTATTGTCATGATTGCAGAATATGGCTGGAAACTTCTGCCTAAGTACACATTTAACCCTGAAACTGGCGAGTGGAGGCATAATCAACATCAGATCTTTAAAGATCGTAAATGGCTTGGCTCCATTTCCTACTCATCAGGGGAAATGAAATATCCTGATAACGTTGATGCCGAAAATGACGAGAAAGTACCAAACTATCAGGAATGTTTGGCCGctgcaaaagaaatttttcaagAGGCTTCTGTTGTTAGGGGCAAAAATAAACCGAACGATCAATCCTTGTTGCTTGGAGACGCTGAAATATTGCGATGGTTCTTGTTACCCAGTGAAGCTGATGCATTCCTTCGTAAGGGAACACGTGATGGCTATCCTAAAGTACCACCGTTTACCCCACTGCGTCGCTGTTATCACGGAGCAATGAAAGTTTTGGGTGAAGAACATGATAATGAAGAGGAAGACAGTAAATCTGAACAGAAATGTACCACAGACTTTAATGTTAAGCTTGAACAAATGGAAGAAAAGCTTGACACAGAGATTTATGTTGAAACAGAAGATAAAGATATTTGTGAATCAGAAACGGCTAAAGACAGTGATGGCTCAGAACTTGAAAACGAAGTTGTTACAAACTGTTCAACTGAAAATTCCCCTGACATAAAACGAACTGACCGTGTCAAATTTCACAATCCTCCGCGTCACGTGTTTAATCTTGTAGTGAAGGCAATTGAAGAGTTTCAAATGATCGAAGATGGTGACCGTGTTCTTATCTGCGTTTCTGGTGGAAAAGACTCCCTCTCCATGTTACATACACTCCACCAATATCAGTTTTATGCCAGAACCAAGGGAGTAAATTTCAGTTTAGGAGCAGCGACGGTAGACCCAGGTTCGGCAGCCTATGATCCCAGTCCATTAAAAATCTACATGCAAGAGCTTGGTGTCGAGTATTTTTATGAAGTTCAAGGAATTATAAAACAAGCATCTGAGCTGGCTGTGTGTGAATCAATTTGTAGTTTTTGTTCCCGGATGAAGAGAGGTCGTCTGTACGCATGCGCACGACGTCATGGATATAATGTGCTTGCTATTGGCCAGCATCTGGATGACATCGCTGAGAGCTTTTTGATGTCAGTGTTTCACAATGGACTTTTAAGAACAATGAAAGCGAACTATCACGTGAGtgAAAACGATCTGCGGGTTATTCGTCCTATGACGTATGTTAGAGAAAAAGATTTAAGAGATTTTGCTGAAAAGTATAAACTACCAGTGATCGCTGAAAATTGTCCAGCGTGTTTTGAAGCTCCAAAGGAACGTCATCGAGTGAAACAGTTGCTTGCAAGTCAAGAAATTTTATTCCCGAACTTGTTTAAAAGCATTCAATCAGCCTTAAAGCCATTAATGGCAAGAAAAAGAACACAAGTGGAAAATAAGGAGTCGTCCATTGATGAACTGTCCTTTTTATGTAGATGA

Transcript

BRAKERXEIT00000044642

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q39QC5	tRNA-cytidine(32) 2-sulfurtransferase OS=Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15) OX=269799 GN=ttcA PE=3 SV=2
Q74GW7	tRNA-cytidine(32) 2-sulfurtransferase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=ttcA PE=3 SV=2
B5ED57	tRNA-cytidine(32) 2-sulfurtransferase OS=Citrifermentans bemidjiense (strain ATCC BAA-1014 / DSM 16622 / JCM 12645 / Bem) OX=404380 GN=ttcA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001160 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00266 all species →	Aminotran_5	Aminotransferase class-V	Domain	Interproscan
PF01171 all species →	ATP_bind_3	PP-loop family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR000192 all species →	Domain	Aminotransferase class V domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR011063 all species →	Domain	tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43686 all species →	SULFURTRANSFERASE-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for BRAKERXEIP00000044642.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERXEIP00000044642.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.