Gene detail

Detailed information of BRAKERXEIP00000044769.1 in Muricea muricata

Genomic Location: chr3:10039032...10046993
NR annotation: CAB4010006.1, 50S ribosomal L4 [Paramuricea clavata]
Species Muricea muricata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5L3Z6	Large ribosomal subunit protein uL4 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=rplD PE=3 SV=1
P28601	Large ribosomal subunit protein uL4 OS=Geobacillus stearothermophilus OX=1422 GN=rplD PE=1 SV=1
C5D3R8	Large ribosomal subunit protein uL4 OS=Geobacillus sp. (strain WCH70) OX=471223 GN=rplD PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004645 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00573 all species →	Ribosomal_L4	Ribosomal protein L4/L1 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013005 all species →	Family	Large ribosomal subunit protein uL4-like	Interproscan
IPR023574 all species →	Homologous_superfamily	Large ribosomal subunit protein uL4 domain superfamily	Interproscan
IPR002136 all species →	Family	Large ribosomal subunit protein uL4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10746 all species →	50S RIBOSOMAL PROTEIN L4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02926	RP-L4, MRPL4, rplD; large subunit ribosomal protein L4	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.