Gene detail

Detailed information of BRAKERXEIP00000046007.1 in Muricea muricata

Genomic Location: not available for this species
NR annotation: CAB4026518.1, leucine-rich repeat-containing 74B-like [Paramuricea clavata]
Species Muricea muricata · all data for this species · gene families

Sequence

CDS

BRAKERXEIT00000046007

ATGAACCATATAATCAAAGTACATTTCGAGCCAGCGAAGAAGCAGCAGTCGTCCCTTGAAAGTTTGGTATTGTCTGGCGCGCATGCTGTTGTTACAAACAAGGGTAAGGCGAGAAAAACACGAAAATTTGCGGCTGTGAAGCGGATGATCTCTCCTAAAGATCCCAGAGTAAAAAAGACCGAAAGTGAAcaacaaaagaaaaagaagaaaaatgatgAGGAGGAAGTAAAACATGTTGACCAAGTATCGTCAGCTCTGTTCTTTCAATACAACACTCAGCTGGGACCTCCTTATTATATCCTCGTTGATACAAATTTTATCAACTTTTCAATCAAAAACAAACTTGATTTGTTCCAGTCAATGATGGACTGTCTTTATGCAAAATGTATACCATGTATAACAGATTGTGTTATGGGAGAATTGGAAAAAATGGGAACAAAATATAGAGTAGCGTTAAGGATAGCCCGTGATGAGAGATTTCAGAGACTACCTTGTATGCACAAAGGAACGTACGCCGACGATTGCCTTGTTAATAGAGTCAGCCAGCACAAATGTTACATCGTGGCGACATGTGACCGAGATTTAAAACGAAGAATACGAAAAGTTCCCGGAGTTCCAATTATGTACATCACACAACACAGATATTCTATAGAGCGCATGCCCGATGCTTACGGAGCGACATTATCTTCATTAGTGGAAAAAACATCGAAATGGATTGCCATTAGAAGCACGTATCACCCCATGGACACTAAGGATTCCCAACACGTTCTGTTGCCACAGGATGGTCCCGTCGTACCAGAAGAAGAACAAGACGGAAATAATTCAGAATCCGGTTTCTTGGAACACGCCGAGGATGCACCAGAAGATGAGCTTCGCAAGAGCTCGGAATCGCTCGACAGCGGTTGGGAAACAGACTTAGAAATCGAGGAACCGGCCAAGTCATTTGACCCAACGGGGAGAAGACTCTATCTTTCGGCATGTGCAAGCATCGGCGTCACTCCAGTTTCATACTTCCTCCGGCATATTCAAGACAAGGATTTAATATTACGTCATCATGGACTGGGACCAAAAGGCGTGAAAGCCGTGGCTATAGCACTCGTGAGTAACACAACTGTCGTGACACTTGATCTCCATGACAACAATATTGGCGATGATGGCGGGAAGTATATTGCAGAAATGGTGAAGGAAAATTGCTACATTGCTTCGTTAGATTTGAATTTGTCCAACAATTTTTTGGGTGATAAAGATGCTGAAGTTCTTGCAGACACCATCAAGGTTAACGGACATTTGATTGACCTCAATCTTAGTGGAAATCGATTTTGCGAAGAAGGCGGAGTGCTACTGGGCCCTAGTATAACTGCAAATGATTCCATTGAAATCCTGGATTTAAGTTGGAATCAAATACGGCGACGGGGCGCAATAGCGATTGCCGCTGGACTTAAGAGTAACTGTACTTTGAAAGTGTTGGATTTATCATGGAATGGTTTTGAAGACGATGGTGCCCGTGCTCTGGGCGATGCATTCAGAGGAAACAATACTCTCACAGAGTTAAACATTCGAAACAATAGGATATCAACAGTTGGCGCAGCCCACATAGCACGAGGTTTAGAAGGAAATAACACATTAGAAATTTTGAAGATTGGTCAAAATCCGATCCAAACAGCGGGAGCTCACTCGGTGTTGTCTGCAGTGAGAACGAAATCAGACAGTGCTATCCATACATTATATCTTGAGGATATTTACCTCGACgacgatttctttgttttattaaaaaatattaacgAACGTAAACCGGTTAAGGTCGTTGGACGAGGCAGACCTTCAGAACGAACACCGTTACATGACGTTAAACAGTATATCAATTGTAATTATGACCGCTGGTTTGAAGTATTTGGGGCGTATGATCCAGATGGTTGCGGGCTCATTTCGAAAGCTCAATTCATTCAGGGTTTGAAGGCAGTGAACTTGACGTTTGACAAAGGTCAGATGGCGTGGTTATGTATTTCATTGACAGAAGACCAAGGATCACAGATCAGCTACAAAAAACCCGCTGAGaacataaagaaaaaaatcCCATCGGCCAAAGTCTCACCTAAACCCGTCACCCCAGTAAAATCGAAACCAAAGAAGAAATCTCGATGA

Transcript

BRAKERXEIT00000046007

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32PD0	rRNA-processing protein FCF1 homolog OS=Bos taurus OX=9913 GN=FCF1 PE=2 SV=1
Q9Y324	rRNA-processing protein FCF1 homolog OS=Homo sapiens OX=9606 GN=FCF1 PE=1 SV=1
Q5RFQ0	rRNA-processing protein FCF1 homolog OS=Pongo abelii OX=9601 GN=FCF1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006493 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04900 all species →	Fcf1	Fcf1	Family	Interproscan
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029060 all species →	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR002716 all species →	Domain	PIN domain	Interproscan
IPR037503 all species →	Domain	rRNA-processing protein Fcf1, PIN domain	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR052394 all species →	Family	Leucine-rich repeat-containing protein	Interproscan
IPR006984 all species →	Family	rRNA-processing protein Fcf1/Utp23	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24114 all species →	LEUCINE RICH REPEAT FAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERXEIP00000046007.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.