Gene detail

Detailed information of BRAKERXEIP00000046209.1 in Muricea muricata

Genomic Location: :...
NR annotation: CAB3981474.1, T-complex 1 subunit delta-like [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERXEIT00000046209

ATGCCTGAAGCTAAGACTGCGGGAAAACCGACGAAATCAAACCGTGAAGTCtataaagacaaagaaaaaccTACGGAAATTCGATTCACGAATATAAATGCAGCAAAAGCTGTTGCTTCTGCTATTCGGACAAGTCTTGGTCCCAAGGGGATGGATAAAATGATCCAAAGTGGAAATGGAGATGTCACGATCACCAATGATGGAGCAACTATCTTAAAACAAATGCAAGTCTTCCATCCAGCAGCTAAAATGCTGGTAGAACTGTCAAAAGCTCAAGATGTTGAAGCTGGTGATGGTACCACAACAGTTGTTGTAATTGCTGGAAGTTTACTAGATGCAGCAGCAAGATTGCTTGAGAAAGGTATCCACCCAATGAACATATCAGATGCATTTGGTGTTGCATGTGAGAAAGGAGTTGAGATATTAAAGAATATTGCAATCCCAGTTGAACTAAATGACCGAGAGTCCTTGCTAAAAAGTGCTTCAACATCTCTCAATTCAAAGGTTGTATCTCAATACTCAAATCTTCTAGCACCAATATCAGTCGATGCCGTGATGAAGGTTATTGATCCAAAAACTGCCAGTAATGTTAACTTAAATGACATCAGAGTCATCACAAAACTAGGTGGCACAGTGGAAGACACAGAGATGGTGGATGGTTTAGTTTTAGAACAGAAAATATCTCATCTGGCTGGTGGAGTATCAAGTATAGAAAAAGCAAAGATTGGTCTCATTCAGTTTTGTTTATCAGCTCCAAAAACAGATATGGATAACCAAGTCATCGTGTCAGATTATACACAGATGGACCGTGTTTTACGAGAAGAGAGACAGTACATCCTAGATTTGtgtaaaaagataaaaaaggCTGGATGCAATGTACTTCTGATTCAAAAGTCCATTCTAAGGGATGCTATAAACGACCTAGCtctacattttttaacaaaaatgaaaattatgGTACTGCGTGATATTGAAAGAGATGAAGTAGAATTTATTTGTaagAGTCTTGGATGTAAACCTGCTGCGAGTGTTGACCATTTTACACCTGATGTACTGGCGTCAGCAGAACTCGTTGAAGAAGTGTCCACAGGCGCTGCTAAAGTTGTAAAGATAACAGGCATAGCAAATCCTGGCAAGACAGTGAGCATATTGGTTCGTGGTTCAAATAAACTTGTTCTTGAGGAGGCTGAACGTTCGTTACATGATGCTCTCTGTGTAGTAAGatgtcttgttaaaaacagAGCGCTAATTGCTGGTGGCGGAGCACCTGAGACAGAACTCTCCATAAATCTCGCACAATATGCAAACACTCTCTCTGGCATGGATTCCTACTGTGTACGAGCATTTTCAGAGGCAATGGAAGTTGTCCCTTATACCTTGGCAGAGAACGCTGGTCTCAATCCCATTGCAACTGTCACTGAGCTCAGGAATAAGCATGCGCAAGGAGAGAAGAACGCTGGTATAAATGTCCGCAAGGGGACAATTACCAACATACTGGATGAGAATGTTCTTCAGCCTCTGTTAGTGTCAACCAGTGCATTGACTTTAGCTTCAGAAACTGTACGAAGTATCCTGAAAATTGATGATATTgCAGCAGAATTTAAAGAAAAGGGAAACAAGGCACTTAAAGACGGCAATGTAACCGAGGCAATTCAAAACTATACTGAAGCAATCAAATTTGACCCAAATAATCATGTATTTTACAGTAATAGATCAGCAGCATATGCTAAGGACAAGTGCTATGAAGAAGCTTTAGCAGATGCTAAGAAGACTGTTGAGTTAAAACCAGATTGGCCAAAGGGTTATTCCCGGTTAGGTGCAGCATATTCATTTCTTTCCAATCCTGAAGAAGCAGAAAAGGCATATGAGAAAGGACTAGAGCTTGATCCAAACAATGCCCAAATAAAGGAAGACTTAGCAACACTGAGAAAAACCTTTTCTGGTCCTGGTAAAAGTGTTCCATTAGATAATCCATTCAATAGTCCAGATCTTATTCCAAAACTTGCATCAAATCCAAAAACTGCTGCATATTTGCAAGACAAAAGCTTTCAACAGATCTTAAAAGAACTAAGAACAGACTCAAAGTCACTTGGAAAacaCTTGCAAGATCCTCGTGTTATGGAAACGTTAGAAGTATTACTTAACATCAGCGTGTACAAATCAGAAGAGCAAGAGGGTAAACCAACATCATCAGCAACAAAAGAAGAGAAACAAAATCCTAAAAAACCTAAACATAAAGAAGAACCAAAGAAAGATGACATAAGCCCAGAGAAGAAAGAAGCTCTCAAAGAAAAAGAGCTTGGTAACACTGCCTATAAAAATAAAGACCTCGATACTGCTATACAACATTACACCAAAGGATACAAGTTAGATCCAACCAATGTTACACTGTTAACAAACCGAGCAGCTGCCTACTTTGAAAAAGAAGAATATGATAAATGTATTAAAGATTGTGAACTGGCTGTAGAGCAAGGGAGAGAACACCGAGttgaattcaaaataattgcTCGTGCCCTAGAGAGAATAGGAAATGTATATCTAAAGCAAGATAAATTGGAAGAAGCACTTGAATATTTTGAAAGATCCTTGACTGAGTTTCGTTCTGATGCTGTTGTAAAGAAGACCAACAAGTTAAAGAAGGACATACAAGAAAAGGAGAAGTTAGCTTATATAAACCCTGAGCTGGCAGAAGAAGAACGTGAAAAAGGAAATGAGTTATTTAAAAAAGGGAAATTTCCAGAAGCAATGAAACATTATACTGAGGCTATAAAAAGAAATCCTAGTGATCCAAAATTGTATAGCAATCGGGCTGCTTGTTATCAGAAGTTGGCTGAAATTCGTCTTGCTGTGAAGGACTGTGATGAATGCATAAAACTGGACCCAAAATTTGTCAAGGGGCATACAAGAAAAGGTGCATGTCATTTTGCAATGAAAGAATACAGCAAAGCCACGGATGCCTACAATAAAGCCTTAGAACTTGATCCCGATAACAAGGAAGCCAAGGAAGGCCTGCAAAGATGTTATGTCACTTCCACAACACCTTCATCAGATCCTGAGGAGGTTAAAAAGAGAGCAATGGCAGACCCTGAAGTACAGGAAATCTTAAGTGATCCAGCCATGAGAATGATTCTTGAGCAAATGACAGAAAATCCTGGAGCAATCCAAGACCATCTTAGAAACCCAGAcatagcaagaaagattcagaaGTTAATGGAAGTTGGTGTACTACAAATGAGATGA

Transcript

BRAKERXEIT00000046209

Protein

Uniprot

Uniprot term	Description
Q2T9X2	T-complex protein 1 subunit delta OS=Bos taurus OX=9913 GN=CCT4 PE=1 SV=3
P50991	T-complex protein 1 subunit delta OS=Homo sapiens OX=9606 GN=CCT4 PE=1 SV=4
Q5R637	T-complex protein 1 subunit delta OS=Pongo abelii OX=9601 GN=CCT4 PE=2 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00515	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13414	TPR_11	TPR repeat	Repeat	Interproscan
PF17830	STI1-HOP_DP	STI1/HOP, DP domain	Domain	Interproscan
PF00118	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR002194	Conserved_site	Chaperonin TCP-1, conserved site	Interproscan
IPR017998	Family	Chaperone tailless complex polypeptide 1 (TCP-1)	Interproscan
IPR012717	Family	T-complex protein 1, delta subunit	Interproscan
IPR027409	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR027413	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan
IPR027410	Homologous_superfamily	TCP-1-like chaperonin intermediate domain superfamily	Interproscan
IPR006636	Domain	Heat shock chaperonin-binding	Interproscan
IPR053374	Family	TCP-1 chaperonin-containing T-complex	Interproscan
IPR041243	Domain	STI1/HOP, DP domain	Interproscan
IPR002423	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11353	CHAPERONIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0051082	Molecular Function	unfolded protein binding	Interproscan
GO:0140662	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0005832	Cellular Component	chaperonin-containing T-complex	Interproscan